Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20817
(796 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 147 1e-35
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.) 138 4e-33
SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.) 111 6e-25
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 91 7e-19
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.) 90 2e-18
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.) 90 2e-18
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19) 77 1e-14
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05) 77 1e-14
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24) 66 2e-11
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23) 61 9e-10
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11) 52 4e-07
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 9e-06
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 8e-04
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06) 39 0.004
SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2) 37 0.016
SB_40118| Best HMM Match : DREPP (HMM E-Value=0.085) 33 0.35
SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39) 32 0.47
SB_24760| Best HMM Match : PT (HMM E-Value=0.17) 31 0.81
SB_47478| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_6387| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035) 30 1.9
SB_3760| Best HMM Match : SVA (HMM E-Value=0.19) 30 1.9
SB_38729| Best HMM Match : PAD_porph (HMM E-Value=1.9e-09) 30 2.5
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_28202| Best HMM Match : Cadherin (HMM E-Value=1.8e-29) 29 5.7
SB_26973| Best HMM Match : DUF471 (HMM E-Value=1.1) 28 7.6
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 147 bits (356), Expect = 1e-35
Identities = 64/84 (76%), Positives = 70/84 (83%)
Frame = +1
Query: 4 PRVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQ 183
PRVFFD+T+ + G+IV+ELRSDV P T ENFR LCT EKGFGYKGS FHR+IP FM Q
Sbjct: 137 PRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQFMCQ 196
Query: 184 GGDFTNHNGTGGKSIYGNKFEDEN 255
GGDFT HNGTGGKSIYG KFEDEN
Sbjct: 197 GGDFTKHNGTGGKSIYGAKFEDEN 220
Score = 127 bits (307), Expect = 9e-30
Identities = 54/78 (69%), Positives = 68/78 (87%)
Frame = +3
Query: 255 FTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGS 434
F LKHTG GVLSMAN+G +TNGSQFF+TT KT WLDG+HVVFGNV+EG +VV+++E GS
Sbjct: 221 FVLKHTGAGVLSMANSGPNTNGSQFFLTTEKTDWLDGKHVVFGNVIEGFDVVRKMEAVGS 280
Query: 435 QSGKTSKRIVIKDCGQIA 488
QSGK SK++VI DCG+++
Sbjct: 281 QSGKASKKVVIDDCGELS 298
>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 138 bits (335), Expect = 4e-33
Identities = 61/81 (75%), Positives = 67/81 (82%)
Frame = +1
Query: 13 FFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGD 192
+FD+ + AP G+IV+ELR DV PKT ENFRALCTGEKGFGYKGS FHRVIP FM QGGD
Sbjct: 6 YFDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPGFMCQGGD 65
Query: 193 FTNHNGTGGKSIYGNKFEDEN 255
FT +GTGGKSIYG KF DEN
Sbjct: 66 FTRGDGTGGKSIYGAKFADEN 86
Score = 122 bits (294), Expect = 3e-28
Identities = 54/77 (70%), Positives = 64/77 (83%)
Frame = +3
Query: 255 FTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGS 434
F LKHTGPG+LSMANAG TNGSQFF+ T KTSWLDG+HVVFG+V +GM+VVK+IE GS
Sbjct: 87 FNLKHTGPGILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKIEKVGS 146
Query: 435 QSGKTSKRIVIKDCGQI 485
SGKTSK++VI D +
Sbjct: 147 DSGKTSKKVVIADSASV 163
>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 111 bits (267), Expect = 6e-25
Identities = 49/83 (59%), Positives = 61/83 (73%)
Frame = +1
Query: 7 RVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQG 186
+V+ DV++ P G++++ L D PKT NF AL E+GFGYK SIFHRVI NFM+QG
Sbjct: 27 KVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQGFGYKDSIFHRVIKNFMIQG 86
Query: 187 GDFTNHNGTGGKSIYGNKFEDEN 255
GDFTN +GTGG SIYG F+DEN
Sbjct: 87 GDFTNKDGTGGYSIYGKYFDDEN 109
Score = 92.3 bits (219), Expect = 4e-19
Identities = 40/56 (71%), Positives = 47/56 (83%)
Frame = +3
Query: 255 FTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE 422
F LKH GPG L MANAG +TNGSQF+ITT+KTSWLDG H FG V+EGM+VV++IE
Sbjct: 110 FNLKHYGPGWLCMANAGKNTNGSQFYITTIKTSWLDGSHTCFGKVLEGMDVVRRIE 165
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 91.5 bits (217), Expect = 7e-19
Identities = 40/75 (53%), Positives = 55/75 (73%)
Frame = +3
Query: 264 KHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSG 443
+H PG+LSMAN+G +TNGSQFFITTV T LDGRHVVFG V++GM+VV+++E
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLKGMDVVRELEATPVDDS 247
Query: 444 KTSKRIVIKDCGQIA 488
+I++CG++A
Sbjct: 248 SPKSPCIIEECGELA 262
>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 89.8 bits (213), Expect = 2e-18
Identities = 42/75 (56%), Positives = 52/75 (69%)
Frame = +3
Query: 291 MANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIK 470
MANAG DTNGSQFFITTVKTSWLDG+HVVFG V+EGM+VV+++E + K +I
Sbjct: 1 MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKLENVNVKGSTPVKTCMID 60
Query: 471 DCGQIA*FKSLTLNK 515
D G + K + K
Sbjct: 61 DSGTLPLDKPFNVEK 75
>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 89.8 bits (213), Expect = 2e-18
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = +3
Query: 255 FTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEV 407
F L+H G G LSMANAG DTNGSQFFITTVKT WLDGRHVVFG V++GMEV
Sbjct: 129 FKLQHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLKGMEV 179
Score = 83.8 bits (198), Expect = 1e-16
Identities = 50/104 (48%), Positives = 62/104 (59%), Gaps = 18/104 (17%)
Frame = +1
Query: 7 RVFFDVTVDDAPLGKI------VIELRSDVTPKTCE-----NFRAL-----CT--GEKGF 132
+VFFD+T+ G+I +I+ + + E NFR CT +KGF
Sbjct: 28 KVFFDITIGGEKAGRIEIGLFVIIKTYYLLATRLVESLIGTNFRYFDTYYCCTIESQKGF 87
Query: 133 GYKGSIFHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENSPL 264
GYK SIFHRVI +FM+QGGDFT +GTGGKSIYG KF DEN L
Sbjct: 88 GYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQKFADENFKL 131
>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
Length = 99
Score = 77.4 bits (182), Expect = 1e-14
Identities = 34/53 (64%), Positives = 41/53 (77%)
Frame = +3
Query: 261 LKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQI 419
L+H P +SMANAG +TNGSQFFIT V T WLD +H VFG VV+GM+V +QI
Sbjct: 22 LRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVFGRVVKGMDVAQQI 74
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +1
Query: 205 NGTGGKSIYGNKFEDE 252
+GTGG+SI+G +FEDE
Sbjct: 2 DGTGGESIWGGEFEDE 17
>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
Length = 49
Score = 77.4 bits (182), Expect = 1e-14
Identities = 33/46 (71%), Positives = 41/46 (89%)
Frame = +3
Query: 282 VLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQI 419
+LSMANAG TNGSQFF+ T KTSWLDG+HVVFG+V +GM+VVK++
Sbjct: 2 ILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKM 47
>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
Length = 145
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/76 (38%), Positives = 45/76 (59%)
Frame = +3
Query: 252 EFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFG 431
+F++ H GV+ MAN G TNGSQF+IT W+D ++V FG V+EG+ V+ +E
Sbjct: 61 DFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKYVAFGQVIEGLNVLDVLEGQE 120
Query: 432 SQSGKTSKRIVIKDCG 479
+ + + + DCG
Sbjct: 121 TFNERPKVECRVADCG 136
>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
Length = 378
Score = 61.3 bits (142), Expect = 9e-10
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Frame = +3
Query: 255 FTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETF-G 431
F KH P +LSMAN G +TNGSQFFI HVVFG+V++G E+V+QIE+
Sbjct: 42 FEFKHERPMLLSMANRGPNTNGSQFFII----------HVVFGHVIQGEELVRQIESLPT 91
Query: 432 SQSGKTSKRIVIKDCGQI 485
++ + + + + +CG++
Sbjct: 92 NEKNRPNADVKVSNCGEL 109
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +1
Query: 205 NGTGGKSIYGNKFEDE 252
NGTGG+SIYG F DE
Sbjct: 25 NGTGGESIYGGTFGDE 40
>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
Length = 48
Score = 52.4 bits (120), Expect = 4e-07
Identities = 26/46 (56%), Positives = 30/46 (65%), Gaps = 8/46 (17%)
Frame = +1
Query: 46 GKIVIELRSDVTPKTCENFRALCTGEKGFG--------YKGSIFHR 159
G+++ EL +D PKT ENFRALCTGEKG G YKG FHR
Sbjct: 2 GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47
>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 48.0 bits (109), Expect = 9e-06
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +1
Query: 43 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDF 195
LG+I IEL +D P + NF A + G+ Y G+ FHRVIP FM+QGG F
Sbjct: 32 LGEIEIELDADKAPISTANFLAYV--DSGY-YAGTQFHRVIPGFMVQGGGF 79
Score = 33.9 bits (74), Expect = 0.15
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = +3
Query: 267 HTGPGVLSMANAGA-DTNGSQFFITTVKTSWLDGR-----HVVFGNVVEGMEVVKQI 419
H G L+MA D+ SQFFI ++LD + VFG VV+GM+VV +I
Sbjct: 101 HNVRGTLAMARTQVRDSATSQFFINHKDNAFLDHGSRDFGYAVFGKVVKGMDVVDKI 157
>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 41.5 bits (93), Expect = 8e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +3
Query: 267 HTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 383
H G +SMAN G ++NGSQFFI K LD ++ +FG
Sbjct: 301 HNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKYTMFG 339
>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
Length = 454
Score = 39.1 bits (87), Expect = 0.004
Identities = 26/65 (40%), Positives = 35/65 (53%)
Frame = +1
Query: 43 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGK 222
+G I IEL TPK C NF LC +G+ Y +IFHR++ +GG+ N G G
Sbjct: 12 VGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIV-----KGGE--NIYGQSGF 61
Query: 223 SIYGN 237
+ GN
Sbjct: 62 KVTGN 66
>SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2)
Length = 175
Score = 37.1 bits (82), Expect = 0.016
Identities = 14/40 (35%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = +3
Query: 369 HVVFGNVVEGMEVVKQIETF-GSQSGKTSKRIVIKDCGQI 485
HVVFG+V++G E+V+QIE+ ++ + + + + +CG++
Sbjct: 3 HVVFGHVIQGEELVRQIESLPTNEKNRPNADVKVSNCGEL 42
>SB_40118| Best HMM Match : DREPP (HMM E-Value=0.085)
Length = 512
Score = 32.7 bits (71), Expect = 0.35
Identities = 26/69 (37%), Positives = 35/69 (50%)
Frame = -3
Query: 479 TTVFDNDSLRGLPRLAAKGLNLLDNFHAFNNIPKDNMSAIQPGGLDSGDEELGTISISTG 300
T V +N + PR A +GL D F+ K+ MS I+PGG D +EE T S G
Sbjct: 431 TKVPENVQPKPKPRRAGEGLPHSDFKSGFSY--KEYMSGIRPGGPDMEEEEKATPQ-SNG 487
Query: 299 ISHGEDARS 273
+ E A+S
Sbjct: 488 DASDEKAQS 496
>SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39)
Length = 432
Score = 32.3 bits (70), Expect = 0.47
Identities = 19/79 (24%), Positives = 38/79 (48%)
Frame = +2
Query: 17 STSLLTMPHWEKLLLS*EVTSLPRRVKTSVPCALARKASVTRAPFSIVSSPISCCKEGTS 196
S +L T E LS V+ + + T+V C L ++ +S+ +SC + S
Sbjct: 346 SKALSTTVSCELKALSTTVSCELKALSTTVSCQLKALSTTVSCELKALSTTVSCQSKALS 405
Query: 197 PTITALGESPSTAISLKTR 253
T++ ++ ST +S +++
Sbjct: 406 TTVSCQSKALSTTVSCQSK 424
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/79 (22%), Positives = 38/79 (48%)
Frame = +2
Query: 17 STSLLTMPHWEKLLLS*EVTSLPRRVKTSVPCALARKASVTRAPFSIVSSPISCCKEGTS 196
S +L T + LS V+ + + T+V C L ++ +S+ +SC + S
Sbjct: 324 SKALSTTVSCQLKALSTTVSCQSKALSTTVSCELKALSTTVSCELKALSTTVSCQLKALS 383
Query: 197 PTITALGESPSTAISLKTR 253
T++ ++ ST +S +++
Sbjct: 384 TTVSCELKALSTTVSCQSK 402
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/77 (22%), Positives = 37/77 (48%)
Frame = +2
Query: 23 SLLTMPHWEKLLLS*EVTSLPRRVKTSVPCALARKASVTRAPFSIVSSPISCCKEGTSPT 202
+L T + LS V+ + + T+V C L ++ +S+ +SC + S T
Sbjct: 337 ALSTTVSCQSKALSTTVSCELKALSTTVSCELKALSTTVSCQLKALSTTVSCELKALSTT 396
Query: 203 ITALGESPSTAISLKTR 253
++ ++ ST +S +++
Sbjct: 397 VSCQSKALSTTVSCQSK 413
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/73 (24%), Positives = 34/73 (46%)
Frame = +2
Query: 23 SLLTMPHWEKLLLS*EVTSLPRRVKTSVPCALARKASVTRAPFSIVSSPISCCKEGTSPT 202
+L T E LS V+ + + T+V C L ++ +S+ +SC + S T
Sbjct: 359 ALSTTVSCELKALSTTVSCQLKALSTTVSCELKALSTTVSCQSKALSTTVSCQSKALSTT 418
Query: 203 ITALGESPSTAIS 241
++ ++ ST +S
Sbjct: 419 VSCQSKALSTTVS 431
>SB_24760| Best HMM Match : PT (HMM E-Value=0.17)
Length = 422
Score = 31.5 bits (68), Expect = 0.81
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = -1
Query: 409 TTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 272
TT PST P T PS+ E +T WEP P PGP
Sbjct: 34 TTGEPSTWEPMTGA-PSTWEPMTGAPSTWEPWTDGPGPYPTDGPGP 78
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 382 PKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 272
P TT PS+ E +T WEP+ AP+ T GP
Sbjct: 32 PFTTGEPSTWEPMTGAPSTWEPMTGAPSTWEPWTDGP 68
>SB_47478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 31.5 bits (68), Expect = 0.81
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Frame = -1
Query: 442 PDWLPKVSICLTTSMPSTTFPKTTCLPS-SQEVLTVVMKNWEPLVSAPALA---MERTPG 275
P LP + TS S+ P LPS S + V PL AP + T G
Sbjct: 131 PTPLPPHPVAKDTSSKSSPSPYD--LPSCSGNLWNPVTSANSPLPPAPNYGPPVLTNTSG 188
Query: 274 PVCLRVNSRLQTYCRRWTFPQCRYGW*SP 188
PV + Q+Y R++T P C Y SP
Sbjct: 189 PVFMPPPPHTQSYRRQFTNPDCSYSIPSP 217
>SB_6387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 31.5 bits (68), Expect = 0.81
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 412 LTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 272
L+ + + FP TT P + + T + EPL+ P +R P P
Sbjct: 13 LSATQLTAAFPTTTTTPVTTQTTTTDVSRTEPLIELPTAQEKRKPCP 59
>SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)
Length = 885
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +1
Query: 37 APLGKIVIELRSDVTPKTCENFRALCTG 120
AP I+I L S V+PKT E+ R LC G
Sbjct: 569 APKIDIIIALDSGVSPKTFEDERQLCAG 596
>SB_3760| Best HMM Match : SVA (HMM E-Value=0.19)
Length = 259
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Frame = -1
Query: 385 FPKTTCLPSSQE-----VLTVVMKNWEPLVSAPALAMERTPGP 272
FP+ + LP S E +LT++++N P ++APA + P P
Sbjct: 81 FPQPSLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123
>SB_38729| Best HMM Match : PAD_porph (HMM E-Value=1.9e-09)
Length = 341
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = -3
Query: 299 ISHGEDARSSVLKGEFSSSNLLP*MDFPPVPLWLVKSPPCSMKLGMTRWKMEPL*PKPFS 120
+ H + R+ + + EF ++ ++ +D P + LW+ PPC M ++ +P K
Sbjct: 46 VIHDKSGRNLLKQHEFVNAQMIE-IDEPGLDLWMRDFPPC-MPKQQVKFSYKPQYIKASR 103
Query: 119 PVHRARKF 96
H A +F
Sbjct: 104 ATHDASRF 111
>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1110
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = -1
Query: 385 FPKTTCLPSSQE-----VLTVVMKNWEPLVSAPALAMERTPGP 272
FP+ LP S E +LT++++N P ++APA + P P
Sbjct: 81 FPQPPLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -1
Query: 430 PKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCLRVNS 251
P+ TTS PST+ P+T ++ T N AP+ + RT + LR ++
Sbjct: 87 PRTGSTTTTSAPSTSTPRTGSTTTTSAPSTSTTSN--STTRAPSTSTPRTGSTITLRTST 144
>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4232
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = -3
Query: 383 PKDNMSAIQPGGLDSGDEELGTISISTGISHGEDARSSVLKGEFSSSNLLP*MDFPP 213
P + QP +DSG+ L I++ R++ G +SSN + +PP
Sbjct: 1363 PDSRLIITQPSSVDSGESTLTIINLDRSDEASYKCRANNTVGIVTSSNTTVTVQYPP 1419
>SB_28202| Best HMM Match : Cadherin (HMM E-Value=1.8e-29)
Length = 242
Score = 28.7 bits (61), Expect = 5.7
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = +1
Query: 10 VFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGG 189
V +VT +P K + DVTPK + E + V+ +F + GG
Sbjct: 1 VVVNVTDGGSPALKSRAMVVIDVTPKPRNLTYDVSVLEGEANVQVMDLKPVVSHFNVSGG 60
Query: 190 DFTNHNGTGGK-SIYGNKFEDENSPL 264
+FT N +G SI GN ++PL
Sbjct: 61 NFTFFNSSGSMFSINGNNLRVGSTPL 86
>SB_26973| Best HMM Match : DUF471 (HMM E-Value=1.1)
Length = 674
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 122 RKASVTRAPFSIVSSPISCCKEGTSPTITALGESP 226
+K R S V SC +EG SPT T+ G++P
Sbjct: 276 KKPFSNREAHSCVELCRSCVREGCSPTPTSRGDAP 310
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,041,903
Number of Sequences: 59808
Number of extensions: 574332
Number of successful extensions: 1609
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1604
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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