Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20816
         (712 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4SB36 Cluster: Chromosome undetermined SCAF14677, whol...    61   3e-08
UniRef50_UPI0000D9D628 Cluster: PREDICTED: polymerase (RNA) II (...    58   2e-07
UniRef50_O15514 Cluster: DNA-directed RNA polymerase II subunit ...    58   2e-07
UniRef50_UPI00004723C0 Cluster: UPI00004723C0 related cluster; n...    53   6e-06
UniRef50_O02092 Cluster: Putative uncharacterized protein; n=2; ...    39   0.11 
UniRef50_A0CHE9 Cluster: Chromosome undetermined scaffold_180, w...    33   9.2  

>UniRef50_Q4SB36 Cluster: Chromosome undetermined SCAF14677, whole
           genome shotgun sequence; n=9; Coelomata|Rep: Chromosome
           undetermined SCAF14677, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 145

 Score = 60.9 bits (141), Expect = 3e-08
 Identities = 31/60 (51%), Positives = 37/60 (61%)
 Frame = +1

Query: 508 TDLQFPKEFENAETLMISEVDMLLENRKXXXXXXXXXXXXXXVFMKTLTYTNMFKKFQKQ 687
           + L FPKEFENAETL+ SEV MLLE+RK              VFMKTL YT  F +F+ +
Sbjct: 18  SQLLFPKEFENAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNR 77


>UniRef50_UPI0000D9D628 Cluster: PREDICTED: polymerase (RNA) II (DNA
           directed) polypeptide D isoform 1; n=1; Macaca
           mulatta|Rep: PREDICTED: polymerase (RNA) II (DNA
           directed) polypeptide D isoform 1 - Macaca mulatta
          Length = 110

 Score = 58.0 bits (134), Expect = 2e-07
 Identities = 30/60 (50%), Positives = 36/60 (60%)
 Frame = +1

Query: 508 TDLQFPKEFENAETLMISEVDMLLENRKXXXXXXXXXXXXXXVFMKTLTYTNMFKKFQKQ 687
           + L FPKEFE AETL+ SEV MLLE+RK              VFMKTL YT  F +F+ +
Sbjct: 18  SQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNR 77


>UniRef50_O15514 Cluster: DNA-directed RNA polymerase II subunit
           RPB4; n=30; Eumetazoa|Rep: DNA-directed RNA polymerase
           II subunit RPB4 - Homo sapiens (Human)
          Length = 142

 Score = 58.0 bits (134), Expect = 2e-07
 Identities = 30/60 (50%), Positives = 36/60 (60%)
 Frame = +1

Query: 508 TDLQFPKEFENAETLMISEVDMLLENRKXXXXXXXXXXXXXXVFMKTLTYTNMFKKFQKQ 687
           + L FPKEFE AETL+ SEV MLLE+RK              VFMKTL YT  F +F+ +
Sbjct: 18  SQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNR 77


>UniRef50_UPI00004723C0 Cluster: UPI00004723C0 related cluster; n=1;
           Mus musculus|Rep: UPI00004723C0 UniRef100 entry - Mus
           musculus
          Length = 83

 Score = 53.2 bits (122), Expect = 6e-06
 Identities = 28/57 (49%), Positives = 33/57 (57%)
 Frame = +1

Query: 514 LQFPKEFENAETLMISEVDMLLENRKXXXXXXXXXXXXXXVFMKTLTYTNMFKKFQK 684
           L FPKEFE  ETL+ SEV  LLE+RK              VFMKTL Y ++F+  QK
Sbjct: 19  LVFPKEFETVETLLNSEVHTLLEHRKQQNEREGRERTAFKVFMKTLNYHSLFQLIQK 75


>UniRef50_O02092 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 232

 Score = 39.1 bits (87), Expect = 0.11
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +1

Query: 511 DLQFPKEFENA--ETLMISEVDMLLENRKXXXXXXXXXXXXXXVFMKTLTYTNMFKKFQK 684
           + +FPKEFE    + L+ +EV +LLE+R+              VF+KTL Y     +F+ 
Sbjct: 108 ECKFPKEFETTTCDALLTAEVYLLLEHRRQSSESKDEIEEMSEVFIKTLNYARRMSRFKN 167

Query: 685 Q 687
           +
Sbjct: 168 R 168


>UniRef50_A0CHE9 Cluster: Chromosome undetermined scaffold_180, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_180, whole genome
            shotgun sequence - Paramecium tetraurelia
          Length = 1138

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -1

Query: 688  FVFGTF*TYWYMLVFS*TLQRILVPLQQIHFELFYFPITCQLQI 557
            F+F TF  Y Y       LQ  L+ L  + F++FY PIT +L++
Sbjct: 998  FLFMTFLIYLYDYPIIQVLQVTLLSLVTVFFQIFYSPITDKLEL 1041


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 569,583,682
Number of Sequences: 1657284
Number of extensions: 9581620
Number of successful extensions: 15078
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15078
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57024798702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)