Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20816
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.14 |rpb4||DNA-directed RNA polymerase II complex subunit...    30   0.28 
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    26   6.1  

>SPBC337.14 |rpb4||DNA-directed RNA polymerase II complex subunit
           Rpb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 135

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +1

Query: 514 LQFPKEFENAETLMISEVDMLLEN-RKXXXXXXXXXXXXXXVFMKTLTYTNMFKKFQKQR 690
           L+   EFEN + L +SE  +L+E                  V  KT+ Y N+F +F+   
Sbjct: 13  LKLGPEFENEDMLTVSEAKILIETVLAQRARETNGEIPMTDVMKKTVAYFNVFARFKTAE 72

Query: 691 DNSCC 705
               C
Sbjct: 73  ATYAC 77


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 472 DWTSTICGGRGCTDLQFPKEFENAETLMISEVD 570
           ++  ++CG  G    +F KE EN   + + E+D
Sbjct: 412 EFARSVCGIEGAFSEEFDKECENNVVVYMPEID 444


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,625
Number of Sequences: 5004
Number of extensions: 46011
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)