Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20816
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000264-9|AAC71124.2|  232|Caenorhabditis elegans Hypothetical ...    39   0.003
AF014939-1|AAB63926.1|  578|Caenorhabditis elegans Hypothetical ...    29   3.3  

>AF000264-9|AAC71124.2|  232|Caenorhabditis elegans Hypothetical
           protein F43E2.2 protein.
          Length = 232

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +1

Query: 511 DLQFPKEFENA--ETLMISEVDMLLENRKXXXXXXXXXXXXXXVFMKTLTYTNMFKKFQK 684
           + +FPKEFE    + L+ +EV +LLE+R+              VF+KTL Y     +F+ 
Sbjct: 108 ECKFPKEFETTTCDALLTAEVYLLLEHRRQSSESKDEIEEMSEVFIKTLNYARRMSRFKN 167

Query: 685 Q 687
           +
Sbjct: 168 R 168


>AF014939-1|AAB63926.1|  578|Caenorhabditis elegans Hypothetical
           protein ZC132.3a protein.
          Length = 578

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -1

Query: 697 YCLFVFGTF*TYWYMLVFS*TLQRILVPLQQIHFELFYFPITCQLQ 560
           +CLFV G F  Y  ++    T    LVP   + FE+F  P   + Q
Sbjct: 524 FCLFVAGNFINYEIIISMFVTSDLFLVPSMVLIFEVFCRPKHVEFQ 569


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,812,324
Number of Sequences: 27780
Number of extensions: 248007
Number of successful extensions: 355
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)