Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20814
         (688 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   3.1  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    23   3.1  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   4.1  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   4.1  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   4.1  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   4.1  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   4.1  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   4.1  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    22   4.1  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   4.1  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   5.4  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   7.2  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   9.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.5  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 222 NPYYNPRAVGGEWPR 266
           NPYY PR    E PR
Sbjct: 230 NPYYRPRTSRTEPPR 244


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 82  TFIMIY*FVFVLTLF*YPLDVKGC*VV 2
           TF +I+  VFV TL    L + GC VV
Sbjct: 209 TFAIIHLSVFVYTLVSVILIIMGCDVV 235


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 210 SRYYNPYYNPRAVGGEWPRSCTASPKPHRRLQ 305
           S Y    Y+P  V  ++P+   A+P P   LQ
Sbjct: 36  STYPPACYSPPQVAPQYPQHPYAAPAPGHGLQ 67


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 210 SRYYNPYYNPRAVGGEWPRSCTASPKPHRRLQ 305
           S Y    Y+P  V  ++P+   A+P P   LQ
Sbjct: 36  STYPPACYSPPQVAPQYPQHPYAAPAPGHGLQ 67


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 210 SRYYNPYYNPRAVGGEWPRSCTASPKPHRRLQ 305
           S Y    Y+P  V  ++P+   A+P P   LQ
Sbjct: 36  STYPPACYSPPQVAPQYPQHPYAAPAPGHGLQ 67


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 210 SRYYNPYYNPRAVGGEWPRSCTASPKPHRRLQ 305
           S Y    Y+P  V  ++P+   A+P P   LQ
Sbjct: 36  STYPPACYSPPQVAPQYPQHPYAAPAPGHGLQ 67


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 210 SRYYNPYYNPRAVGGEWPRSCTASPKPHRRLQ 305
           S Y    Y+P  V  ++P+   A+P P   LQ
Sbjct: 36  STYPPACYSPPQVAPQYPQHPYAAPAPGHGLQ 67


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 210 SRYYNPYYNPRAVGGEWPRSCTASPKPHRRLQ 305
           S Y    Y+P  V  ++P+   A+P P   LQ
Sbjct: 36  STYPPACYSPPQVAPQYPQHPYAAPAPGHGLQ 67


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 210 SRYYNPYYNPRAVGGEWPRSCTASPKPHRRLQ 305
           S Y    Y+P  V  ++P+   A+P P   LQ
Sbjct: 36  STYPPACYSPPQVAPQYPQHPYAAPAPGHGLQ 67


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 210 SRYYNPYYNPRAVGGEWPRSCTASPKPHRRLQ 305
           S Y    Y+P  V  ++P+   A+P P   LQ
Sbjct: 36  STYPPACYSPPQVAPQYPQHPYAAPAPGHGLQ 67


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 346 CRYQLRTATRKRSLLPSATREPDLQPHSSDRTG 444
           C+Y  R  T+  +LL       D +P+S D  G
Sbjct: 82  CKYCNRQFTKSYNLLIHERTHTDERPYSCDICG 114


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 129 YTYNPYYGNVDSLS 170
           Y   PYY N+D LS
Sbjct: 253 YNNYPYYSNMDYLS 266


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +3

Query: 81  VMYAFVMMSCALLVQAYTY 137
           + YAF   SC +++Q+ ++
Sbjct: 144 ICYAFGKFSCKVMIQSVSF 162


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +3

Query: 81  VMYAFVMMSCALLVQAYTY 137
           + YAF   SC +++Q+ ++
Sbjct: 377 ICYAFGKFSCKVMIQSVSF 395


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +3

Query: 81  VMYAFVMMSCALLVQAYTY 137
           + YAF   SC +++Q+ ++
Sbjct: 377 ICYAFGKFSCKVMIQSVSF 395


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,989
Number of Sequences: 336
Number of extensions: 3492
Number of successful extensions: 20
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)