Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20814
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 36 0.004
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 28 1.1
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 3.4
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 4.4
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 26 4.4
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 26 4.4
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo... 26 5.9
SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||... 26 5.9
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 7.8
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom... 25 7.8
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 25 7.8
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 25 7.8
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 36.3 bits (80), Expect = 0.004
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 314 VYIPDRRRQTLADTSYVPQQENEV--YYPQQPENPIFSPTQATELADP 451
VY+PD Y+P+ V YYPQQP P+F ++ TEL DP
Sbjct: 497 VYVPDAT-DAAKPQYYIPKDPYPVPHYYPQQPL-PLFDSSEMTELVDP 542
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 145 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVNGRVHVP 276
T+ TP+PT T + +VTT LT P V V VP
Sbjct: 269 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEVP 312
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 145 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVNGRVHVP 276
T+ TP+PT T + +VTT LT P V V VP
Sbjct: 347 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEVP 390
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 145 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVNGRVHVP 276
T+ TP+PT T + +VTT LT P V V VP
Sbjct: 503 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEVP 546
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 145 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVNGRVHVP 276
T+ TP+PT T + +VTT LT P V V VP
Sbjct: 581 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEVP 624
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 145 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVNGRVHVP 276
T+ TP+PT T + +VTT LT P V V +P
Sbjct: 425 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEIP 468
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +1
Query: 145 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVNGRVHVPPARS 288
T+ TP+PT T +S +VTT LT + V V VP S
Sbjct: 659 TVYVETPYPTTVTTTTTVGYSGSVTTTLTGSGSNSIVTETVDVPTTTS 706
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 124 KRIPTIPTMETWTPFPTARAIVTE 195
K IPT PT E+ PFP+ A T+
Sbjct: 286 KSIPTTPTGESLWPFPSENANKTQ 309
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +3
Query: 279 SPKPHRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSS 419
S H + + +++ +P+P YR + TLSN++T S
Sbjct: 45 SQDTHSCASKQDAVFQLLSETKIPVPNRYRKISHRLSTLSNKKTLKS 91
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 440 LADPTEKIELYSTTLVPVAKATERLPLLNY 529
L D E+++LY P+ + E+LP L Y
Sbjct: 294 LKDLRERVDLYKKYYEPLDERDEQLPFLQY 323
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 26.2 bits (55), Expect = 4.4
Identities = 20/55 (36%), Positives = 22/55 (40%)
Frame = +3
Query: 333 AARPLPIPATYRNKKTKSITLSNQRTRSSAPLKRPNWLTPLKRSNCTPPLWYRLP 497
AA PL P + T + SN S PL P P K S PP RLP
Sbjct: 357 AAEPLATPPRHPLNATNGTSQSN----ISTPLPEPTPGQPRKVSGHNPPSARRLP 407
>SPCC1795.03 |gms1||UDP-galactose transporter
Gms1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 353
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 260 AAFMYRQPEAAQAPSTGQVYIP 325
A F+Y +PE+ +PS G YIP
Sbjct: 318 ATFLYTKPESKPSPSRG-TYIP 338
>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 327
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 123 QAYTYNPYYGNVDSLSYGSGDSN 191
Q YT PYY ++ S+ +GS S+
Sbjct: 41 QHYTGAPYYSSMSSMLFGSDQSH 63
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +2
Query: 353 TSYVPQQENEVYYPQQPENPIFSPTQATELADPTEKIELYSTT 481
TS+ PQ ++ +Y + + S T+ + + T K++ S T
Sbjct: 720 TSFNPQHDSRIYNHNGKQKLVISFTETMDCNEITSKLQFSSKT 762
>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 381 KSITLSNQRTRSSAPLKRPNWLTPLKRSNCTP 476
K I+L +RT L+ P +TPL R+ P
Sbjct: 54 KMISLPKERTSDGVLLQLPETVTPLPRAKPLP 85
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 114 LLVQAYTYNPYYGNVDSLSYGSGDSNRGGLVMSRYYNPYYNPRAVGGEWP 263
LL+ ++ YN Y G + + G +GG VMS Y + VG +P
Sbjct: 247 LLIDSW-YNSYQGVIGLVRIMEGFIKKGGKVMSVNTGRKYEVQQVGIMYP 295
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/29 (31%), Positives = 13/29 (44%)
Frame = +2
Query: 371 QENEVYYPQQPENPIFSPTQATELADPTE 457
+ N YPQ + P+ P A DP +
Sbjct: 155 EHNGPVYPQDQQGPVIIPNSAISSTDPDD 183
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,345
Number of Sequences: 5004
Number of extensions: 52500
Number of successful extensions: 190
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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