Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20814
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0750 - 6754126-6755248,6755331-6755791 31 1.1
03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784... 30 2.0
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 29 2.6
05_03_0032 - 7582595-7582690,7582879-7583004,7583119-7583185,758... 29 2.6
02_05_1301 + 35564106-35564368,35564479-35564560,35564831-355650... 29 2.6
06_01_0760 - 5676973-5677830 24 3.3
09_02_0626 + 11352690-11353078,11353106-11354006 29 3.5
01_06_1341 - 36434098-36436080 29 3.5
11_06_0372 + 22781438-22781977 29 4.6
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 29 4.6
01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617 29 4.6
09_06_0264 - 21929086-21931368 28 6.0
04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004 28 6.0
01_03_0059 + 12109301-12109330,12109465-12109587,12109663-12110112 28 6.0
10_07_0107 - 12936839-12937030,12937305-12937386,12937476-129375... 28 8.0
09_04_0751 + 19927164-19927835,19927926-19928663 28 8.0
09_02_0587 - 10948888-10949124,10949281-10949393,10949830-109502... 28 8.0
06_03_1234 - 28586365-28587973,28590411-28590694 28 8.0
06_01_0127 - 977667-978719,978875-979051 28 8.0
04_04_1410 + 33363784-33364086,33364221-33364280,33364388-333644... 28 8.0
04_04_0575 - 26342697-26342885,26343030-26343165,26343279-263437... 28 8.0
>12_01_0750 - 6754126-6755248,6755331-6755791
Length = 527
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -3
Query: 443 PVRSLEWG*RSGSLVAEGNRLRFLVAVR-SW-YRQGSGGDDQVCTPGPLKAP 294
P L W S A G R F+VA R +W +R+G GD C G L P
Sbjct: 212 PREFLRWLTSQPSWAALGGRDHFMVAARTTWMFRRGGAGDSLGCGNGFLSRP 263
>03_06_0074 -
31476094-31476215,31477803-31478238,31478438-31478485,
31478569-31479018,31479567-31479681,31480052-31480905
Length = 674
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +1
Query: 274 PPARSRTGAFNGPGVHT*SSPPDPCRYQLRTATRKRSLLPSATREPDLQPHS 429
PP R PG+ T P TAT KR+ P++T P PH+
Sbjct: 43 PPLPPRRSPQKRPGLPTIPENGPPAGMATATATPKRTRTPTSTCAPPPPPHA 94
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/70 (25%), Positives = 27/70 (38%)
Frame = +2
Query: 263 AFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSPTQATEL 442
+ + R E A P T Y P +Y PQ + E Y P QP+ + P +
Sbjct: 209 SLLARDVEHAAYPPTSTTYPPQPYPPQPQGQTYPPQPQGETYQP-QPQRETYPPQPQVQP 267
Query: 443 ADPTEKIELY 472
P + + Y
Sbjct: 268 YPPKPQGQPY 277
>05_03_0032 -
7582595-7582690,7582879-7583004,7583119-7583185,
7583268-7583470
Length = 163
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +3
Query: 174 GSGDSN-RGGLVMSRYYNPYYNPRAVGGEWPRSCTA-SPKPHRRLQRARCTYLIVAAR 341
G+GD N RGG + NPR GG PR C+ SP+ + + VAAR
Sbjct: 11 GAGDENPRGGGGENTMGTSGGNPRGYGGRGPRGCSGESPRGYSNSKPTGTVEGWVAAR 68
>02_05_1301 +
35564106-35564368,35564479-35564560,35564831-35565026,
35565286-35565415,35565508-35565695,35565856-35565944,
35566841-35567023
Length = 376
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +3
Query: 249 GGEWPRSCTASPKP---HRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSS 419
G +W + P+ H L + C YLI A+P + +T + T S RT S
Sbjct: 95 GAQWTEVISWEPRAFVYHNFLSKEECDYLIGLAKPHMVKSTVVDSTTGKSKDSRVRTSSG 154
Query: 420 APLKR 434
L+R
Sbjct: 155 MFLQR 159
>06_01_0760 - 5676973-5677830
Length = 285
Score = 24.2 bits (50), Expect(2) = 3.3
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +3
Query: 174 GSGDSNRGGLVMSRYYNPYYNPRAVGGEW 260
GSG + G + Y PYY P G +
Sbjct: 171 GSGSGSGSGYGQAGGYGPYYGPYGGSGAY 199
Score = 23.4 bits (48), Expect(2) = 3.3
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 123 QAYTYNPYYGNVDSLSYGSGDSNRGG 200
QA Y PY GN + G G GG
Sbjct: 140 QAGGYGPYGGNAYAQGGGQGGGGGGG 165
>09_02_0626 + 11352690-11353078,11353106-11354006
Length = 429
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = -3
Query: 476 WSTIRSFQWGQPVRSLEWG*RSGSLVA---EGNRLRFLVAVRSWYRQGSGGDD 327
W T+ F G R+ E + + + EG+ RF+ + S GSGGDD
Sbjct: 373 WRTLEDFPPGTEARAREQVREAANAIVSGFEGSAPRFISGLASDEESGSGGDD 425
>01_06_1341 - 36434098-36436080
Length = 660
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 276 ASPKPHRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLK 431
A P+ R+ R+RC + + P P PA N +++ S + R++A L+
Sbjct: 21 AGPRARPRVSRSRCVASLASQPPTPPPAN-ANHLVQTLCASGRLARAAALLQ 71
>11_06_0372 + 22781438-22781977
Length = 179
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 336 ARPLPIPATYRNKKTKSITLSNQRTRSSAPLKRPNWLTPLKRSNCTPP 479
++ P PA + KKTK+ T ++ + PL W+ KR T P
Sbjct: 15 SKAAPAPAPAKKKKTKTTTTTS--AMAPLPLAEVKWILAQKREPYTNP 60
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +3
Query: 261 PRSCTASPKPHRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKRP 437
PR + SP P R R + + RP P P + ++L+ R+R +P P
Sbjct: 11 PRFVSPSPSPAVAATRRRLRFPLAPPRPRPPPLRWSPPSPFRLSLTLSRSRRHSPPPPP 69
>01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617
Length = 507
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -1
Query: 574 PSSPWAPQLRVLPALVVQERQAFGSLGNRYQSGGVQFDLFSGVSQFGRLSGA 419
PSSP P V A V + +G V + F G++ FG ++GA
Sbjct: 370 PSSPSPPNAAVTVASVAATASLTDFAASAISAGAVANNQFQGLADFGLVAGA 421
>09_06_0264 - 21929086-21931368
Length = 760
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 338 QTLADTSYVPQQENEVYYPQQPENPIFSPTQATELADPTEKI 463
+TLAD +P+ E E +P++ +SP+Q +PT +
Sbjct: 699 KTLADKLQMPEPEPEPEREPEPKSGPYSPSQEIVQGEPTATV 740
>04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004
Length = 578
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = +1
Query: 364 TATRKRSLLPSATREPDLQ--PH 426
T +++ SLLPS REPDL+ PH
Sbjct: 123 TLSKQNSLLPSRIREPDLELPPH 145
>01_03_0059 + 12109301-12109330,12109465-12109587,12109663-12110112
Length = 200
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -3
Query: 359 SWYRQGSGGDDQVCTPGPLKAPVRLRAGG 273
SWY GSG V P APV + AGG
Sbjct: 132 SWYASGSGVGRMVQVPAIDAAPVCIAAGG 160
>10_07_0107 -
12936839-12937030,12937305-12937386,12937476-12937586,
12937667-12937918,12938004-12940237,12940328-12940525
Length = 1022
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 326 DRRRQTLADTSYVPQQENEVYYPQQPENPIFSPTQATELADPTEKIELYSTTLVP 490
D+ ++ L+D Y Q E +Y ENPI P + PT+ + TT VP
Sbjct: 393 DKYKEQLSDKIYA--QVKEHFYSLAAENPIAFPRLFPDSQQPTQSAQ--QTTNVP 443
>09_04_0751 + 19927164-19927835,19927926-19928663
Length = 469
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 652 LWVVRSHLLPRLPQEASSPVSSY*RQPSSPWAPQLRVL 539
LWVVR+ ++P+ ++ + R W PQL VL
Sbjct: 311 LWVVRASETSKIPEGFAAKAAKQGRGLIVTWCPQLEVL 348
>09_02_0587 -
10948888-10949124,10949281-10949393,10949830-10950293,
10951223-10951766,10951902-10951971
Length = 475
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 529 VVQERQAFGSLGNRYQSGGVQFDLFSGVS 443
+V+ R A+G+ + S +QFDL+ GV+
Sbjct: 101 LVRVRSAYGNYDGKNSSSTIQFDLYLGVN 129
>06_03_1234 - 28586365-28587973,28590411-28590694
Length = 630
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 279 WRYMNAAIHRPQLWGCSKDCSNGS 208
WR++N + P WG + C NGS
Sbjct: 354 WRHVNVSSAPPGRWGHTLSCLNGS 377
>06_01_0127 - 977667-978719,978875-979051
Length = 409
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 267 SCTASPKPHRRLQRARCTYLIVAARPLPIPAT 362
S T SP +R L R+ +IVA RPLP+P T
Sbjct: 257 SSTMSPTFYRVLLRS----IIVAGRPLPVPPT 284
>04_04_1410 +
33363784-33364086,33364221-33364280,33364388-33364464,
33365032-33365089,33365179-33365262,33365358-33365394,
33365855-33365924,33366655-33366849,33366947-33367039,
33367187-33367418,33367515-33367598,33368205-33368301,
33368510-33368577,33368662-33368739,33368823-33368945,
33369059-33369172,33369288-33369368
Length = 617
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3
Query: 374 LVAVRSWYRQGSGGDDQVCTPGPLKAPVRLRA 279
+V + W+R G G + P P PV++ A
Sbjct: 43 VVILAVWFRSGGGAPPKAAAPPPRPPPVKIEA 74
>04_04_0575 -
26342697-26342885,26343030-26343165,26343279-26343795,
26344286-26344381,26344933-26345011,26345329-26345712
Length = 466
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -1
Query: 562 WAPQLRVLPALVVQERQAFGSLGNRYQSGGVQFDLFSGV--SQFGRLSG 422
WA R+L A Q++ G + +R S L+SG+ S G+L G
Sbjct: 122 WAGPARLLSATGSQQKMGLGQVVDRLMSASGPAGLYSGIGWSVLGKLPG 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,907,399
Number of Sequences: 37544
Number of extensions: 423795
Number of successful extensions: 1474
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1466
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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