Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20814
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54930| Best HMM Match : HABP4_PAI-RBP1 (HMM E-Value=0.4)            32   0.50 
SB_34512| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_57200| Best HMM Match : Plasmodium_HRP (HMM E-Value=4.7)            31   1.2  
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)            29   3.5  
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   3.5  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_47028| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)                 28   6.2  
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_12604| Best HMM Match : PsbH (HMM E-Value=5.9)                      28   6.2  
SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_54930| Best HMM Match : HABP4_PAI-RBP1 (HMM E-Value=0.4)
          Length = 365

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +3

Query: 372 KKTKSITLSNQRTRSSAPLKRPNWLTPLKRSNCTPPL 482
           K+T S+ L +++T S    +RPNW   LK+++  PP+
Sbjct: 298 KRTGSVPLQSRKTSSG---ERPNWSQNLKKASYVPPM 331


>SB_34512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1080

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 26/61 (42%), Positives = 33/61 (54%)
 Frame = +2

Query: 278 QPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSPTQATELADPTE 457
           Q E A A S   V +P+R  QT +  S  P+Q N+V  PQ  E P  S T A  LA+P E
Sbjct: 625 QHELAVADSP-VVCLPER--QTHSGESATPEQTNQVVEPQM-EEPQGS-TSAQHLAEPDE 679

Query: 458 K 460
           +
Sbjct: 680 Q 680


>SB_57200| Best HMM Match : Plasmodium_HRP (HMM E-Value=4.7)
          Length = 346

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
 Frame = +3

Query: 204 VMSRYYNPYYNPRAVGGEWP--RSCTASPKPHRRLQRARCTYLIVAARPLPIP--ATYRN 371
           V +RY+ P Y+ RA+   WP  +S  A P P ++  RA     I + R LP P   + R 
Sbjct: 224 VFARYHGPQYSVRAL--PWPPKQSVRALPWPPKQSVRALPWPAIQSIRALPWPPIQSIRA 281

Query: 372 KKTKSITLSNQRTRSSAPLKRPNWLTPLKRSNCT 473
                I  S     + A   R    T  K S  T
Sbjct: 282 LPWPPIQCSRVTMATKAKCSRATMATNTKYSRAT 315


>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
          Length = 509

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
 Frame = +2

Query: 320 IPDRRRQTLADTSYVPQQENEVYYPQQ--PENPIFSPTQATELADPTEKIELYSTTLVPV 493
           IP  +R  L  +  +P  +     P Q  P N   +PT  T    P        T   P 
Sbjct: 11  IPHHQRPPLLPSQQIPHHQRPPLLPSQQLPHNRTTTPTTPTTTTPPATTTPTKPTNTTPP 70

Query: 494 AKATERLP 517
           A  T   P
Sbjct: 71  ATTTPTKP 78


>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1973

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 332  RRQTLADTSYVPQQENEVYYPQQPENP-IFSPTQATELADPTEKIELYSTTLVPVAKATE 508
            + QT ++ S   + ENE    ++ ++     PT    LA PT + E+ +TT   V   TE
Sbjct: 1491 KMQTKSENSKDQKTENETSKVEKAQDKSTVQPTSLRPLALPTGEPEVKTTTTSEVNHVTE 1550

Query: 509  RLP 517
            + P
Sbjct: 1551 KTP 1553


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
 Frame = +3

Query: 261  PRSCTASPKPHRRLQRARCTYLIVAAR---PLPIPATYRNKKTKSITLSNQRTRS---SA 422
            PR    SP P  R +R R +Y     R   P P P   R +K+ S +   +R RS   S 
Sbjct: 884  PRRRRRSPSPPPR-RRRRDSYSPSRRRRDSPTPSPPPRRRRKSPSPSPPRRRRRSPSNSP 942

Query: 423  PLKRPNWLTPLKRSNC-TPP 479
            P  R + L P +R    TPP
Sbjct: 943  PPMRSSPLPPPQRKRASTPP 962


>SB_47028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +3

Query: 72  IMKVMYAFV-MMSCALLVQAYTYNPYYGNVDS 164
           IMKV+ A + ++ CA+ ++ YT + Y+G V S
Sbjct: 94  IMKVVIALLALVLCAVQIEGYTSSMYFGVVSS 125


>SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)
          Length = 769

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
 Frame = +2

Query: 284 EAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYP---QQPENPIFSP-TQATELADP 451
           + AQAPST Q+ +   R++T    S   Q    +  P   + P + +  P  Q    A P
Sbjct: 181 QTAQAPSTPQIQLSIMRQETPESDSEATQTYLHIENPVSTRPPTDNVNEPDIQPNTRAQP 240

Query: 452 TEKIELYSTTLVPVAKA 502
           T + +  +  L P A A
Sbjct: 241 TSRQQETAAPLSPFAAA 257


>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1670

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
 Frame = +2

Query: 284  EAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYP---QQPENPIFSP-TQATELADP 451
            + AQAPST Q+ +   R++T    S   Q    +  P   + P + +  P  Q    A P
Sbjct: 848  QTAQAPSTPQIQLSIMRQETPESDSEATQTYLHIENPVSTRPPTDNVNEPDIQPNTRAQP 907

Query: 452  TEKIELYSTTLVPVAKA 502
            T + +  +  L P A A
Sbjct: 908  TSRQQETAAPLSPFAAA 924


>SB_12604| Best HMM Match : PsbH (HMM E-Value=5.9)
          Length = 105

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +3

Query: 72  IMKVMYAFV-MMSCALLVQAYTYNPYYGNVDS 164
           IMKV+ A + ++ CA+ ++ YT + Y+G V S
Sbjct: 44  IMKVVIALLALVLCAVQIEGYTNSVYFGVVSS 75


>SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +2

Query: 368 QQENEVYYPQQPENPIFSPTQATELADPTEKIELYSTTLVPVAKATERLP 517
           QQ+ +    QQ   P  +  Q  E    TE  E  STT +P  ++T   P
Sbjct: 234 QQQRQPRPSQQQRYPRHNQQQTPETQSTTEIPETQSTTEIPETQSTTETP 283


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,629,693
Number of Sequences: 59808
Number of extensions: 433317
Number of successful extensions: 1345
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)