Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20814
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.17 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.17 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.3  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -1

Query: 568 SPWAPQ--LRVLPALVVQERQAFGSLGNRYQSGGV 470
           +PW  +  + +LP L+V  R  +    NRY SG V
Sbjct: 342 APWVKRVFIHILPRLLVMRRPQYKFETNRYSSGRV 376


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -1

Query: 568 SPWAPQ--LRVLPALVVQERQAFGSLGNRYQSGGV 470
           +PW  +  + +LP L+V  R  +    NRY SG V
Sbjct: 342 APWVKRVFIHILPRLLVMRRPQYKFETNRYSSGRV 376


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 22/74 (29%), Positives = 32/74 (43%)
 Frame = -1

Query: 562  WAPQLRVLPALVVQERQAFGSLGNRYQSGGVQFDLFSGVSQFGRLSGAEDRVLWLLRVID 383
            W+P L   P L   + Q F ++G R  S       FS VS  G   GAE R+  L     
Sbjct: 1027 WSPPL---PELRHGDIQGF-NVGYRETSSSNPSYNFSSVSGDGEEGGAELRLTGLRPYTK 1082

Query: 382  FVFLLRYVAGIGKG 341
            +  +++    +G G
Sbjct: 1083 YTLVVQAYNQVGSG 1096


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 22/74 (29%), Positives = 32/74 (43%)
 Frame = -1

Query: 562  WAPQLRVLPALVVQERQAFGSLGNRYQSGGVQFDLFSGVSQFGRLSGAEDRVLWLLRVID 383
            W+P L   P L   + Q F ++G R  S       FS VS  G   GAE R+  L     
Sbjct: 1023 WSPPL---PELRHGDIQGF-NVGYRETSSSNPSYNFSSVSGDGEEGGAELRLTGLRPYTK 1078

Query: 382  FVFLLRYVAGIGKG 341
            +  +++    +G G
Sbjct: 1079 YTLVVQAYNQVGSG 1092


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +3

Query: 207 MSRYYNPYYNPRAVGGEWPRSCTASPKPHRRLQRAR 314
           +S    P  NP    G W  SC A   P R+   +R
Sbjct: 370 LSAIPEPSKNPAM--GHWQMSCVACSPPPRQTPPSR 403


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 326 DRRRQTLADTSYVPQQENEVYYP 394
           D   QT++ T+ V Q+E E Y P
Sbjct: 338 DLTTQTVSTTADVLQEEEEEYSP 360


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/45 (20%), Positives = 21/45 (46%)
 Frame = +3

Query: 87  YAFVMMSCALLVQAYTYNPYYGNVDSLSYGSGDSNRGGLVMSRYY 221
           + F   +C +   ++TY+    ++  ++   GD    G+ +  YY
Sbjct: 152 FPFDQQTCFMKFGSWTYDGIQIDLKHINQNMGDKVEIGIDLREYY 196


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
 Frame = +2

Query: 326  DRRRQTLADTSYVPQQENEV--YYPQQPENPIFSPTQATELADPTEKIELYSTTLV 487
            DR R+TL      PQQ+ +      QQ +     P      A PT+K     + L+
Sbjct: 1437 DRDRKTLTSAPQQPQQQQQQQQQQQQQQQQLNHYPDLHNLYAVPTDKKSACDSKLI 1492


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,292
Number of Sequences: 438
Number of extensions: 4684
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)