Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20814
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20270.1 68414.m02531 oxidoreductase, 2OG-Fe(II) oxygenase fa...    31   0.72 
At5g66060.1 68418.m08323 oxidoreductase, 2OG-Fe(II) oxygenase fa...    29   2.2  
At5g16220.1 68418.m01895 octicosapeptide/Phox/Bem1p (PB1) domain...    29   3.8  
At3g57170.1 68416.m06365 N-acetylglucosaminyl transferase compon...    28   5.0  
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu...    28   6.7  
At5g28120.1 68418.m03396 hypothetical protein                          27   8.8  
At5g28110.1 68418.m03395 hypothetical protein                          27   8.8  
At5g18510.1 68418.m02185 hypothetical protein                          27   8.8  

>At1g20270.1 68414.m02531 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to prolyl 4-hydroxylase, alpha
           subunit, from Gallus gallus [GI:212530], Rattus
           norvegicus [GI:474940], Mus musculus [SP|Q60715];
           contains PF03171 2OG-Fe(II) oxygenase superfamily domain
          Length = 287

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +3

Query: 249 GGEWPRSCTASPKP---HRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSS 419
           G +W    +  P+    H  L +  C YLI  A+P  + +T  + +T     S  RT S 
Sbjct: 72  GDQWTEVLSWEPRAFVYHNFLSKEECEYLISLAKPHMVKSTVVDSETGKSKDSRVRTSSG 131

Query: 420 APLKR 434
             L+R
Sbjct: 132 TFLRR 136


>At5g66060.1 68418.m08323 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to prolyl 4-hydroxylase, alpha
           subunit, from Rattus norvegicus [GI:474940], Mus
           musculus [SP|Q60715], Homo sapiens [GI:18073925];
           contains PF03171 2OG-Fe(II) oxygenase superfamily domain
          Length = 267

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +3

Query: 291 HRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKR 434
           H  L +  C YLI  A+P    +T  ++KT   T S  RT S   L R
Sbjct: 91  HNFLTKEECKYLIELAKPHMEKSTVVDEKTGKSTDSRVRTSSGTFLAR 138


>At5g16220.1 68418.m01895 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein hypothetical proteins -
           Arabidopsis thaliana contains Pfam profile PF00564: PB1
           domain
          Length = 476

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 278 QPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPE-NPIF 418
           Q +  Q   TGQ YI      TL  T+Y     N VYY + P+  PI+
Sbjct: 326 QQQHIQVIYTGQPYITGNSPMTLPATAY--HHTNHVYYQRPPQPYPIY 371


>At3g57170.1 68416.m06365 N-acetylglucosaminyl transferase component
           family protein / Gpi1 family protein similar to
           SP|O14357 N-acetylglucosaminyl-phosphatidylinositol
           biosynthetic protein gpi1 {Schizosaccharomyces pombe};
           contains Pfam profile PF05024: N-acetylglucosaminyl
           transferase component (Gpi1)
          Length = 560

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 384 SITLSNQRTRSSAPLKRPNWLTPL 455
           S++ SN   ++ APLK+P W+  L
Sbjct: 49  SLSFSNSSPQTKAPLKKPKWVDDL 72


>At1g07350.1 68414.m00783 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to GB:Y09506 from
           [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
           (1997))
          Length = 382

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 6/107 (5%)
 Frame = +3

Query: 132 TYNPYYGN--VDSLSYGSGDSNRGGLVMSRYYNPYYNPRAVGGEWPRSCTA---SPKPHR 296
           +Y+P+Y      S S      +R      R Y+PYY  R     + R+C A   SP   R
Sbjct: 215 SYSPFYRRRRFYSPSRSPSPDDRYNRRRDRSYSPYYRRRDRSRSYSRNCRARDRSPYYMR 274

Query: 297 RLQ-RARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKR 434
           R + R+R       AR       YR +          R RS +P  R
Sbjct: 275 RYRSRSRSYSPRYRARDRSCSPYYRGRDRSYSPHYQGRDRSYSPESR 321


>At5g28120.1 68418.m03396 hypothetical protein
          Length = 506

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 144 YYGNVDSLSYGSGDSNRGGLVMSR 215
           Y GN+D + +G GD ++  L+ SR
Sbjct: 122 YVGNIDRVRWGPGDKDQKTLIKSR 145


>At5g28110.1 68418.m03395 hypothetical protein
          Length = 493

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 144 YYGNVDSLSYGSGDSNRGGLVMSR 215
           Y GN+D + +G GD ++  L+ SR
Sbjct: 122 YVGNIDRVRWGPGDKDQKTLIKSR 145


>At5g18510.1 68418.m02185 hypothetical protein
          Length = 702

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 407 NPIFSPTQATELADPTEKIE 466
           +P+FSP + +E+ D  EK+E
Sbjct: 137 SPVFSPLECSEMRDSAEKLE 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,301,698
Number of Sequences: 28952
Number of extensions: 298797
Number of successful extensions: 949
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)