Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20813
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    27   1.9  
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    27   2.5  
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|...    26   4.4  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.8  
SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc...    25   7.7  

>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +2

Query: 344 PQLRGLQPHH--SRLGGHRVPRSIRNAPPS 427
           P +R + P    SRLG    PR + N PPS
Sbjct: 452 PHIRNIDPFGGLSRLGREEYPRRLSNPPPS 481


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 270 VLEKDVPITDLIKPICIPKDTELRSRSFEDYNPIIAGWGD--TEFRGPSATHLQVLQL 437
           V+E++V  T  ++    PK      R F+D+ P +   GD     R  ++ H+Q++ +
Sbjct: 30  VVEEEVIATGEVENYAEPKSRNFLQRFFDDFKPALTTRGDGVALKRKLTSRHMQMISV 87


>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 201

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = +3

Query: 441 VVSNDFCAQA--YSPYKNQKID 500
           +V NDF A A  Y+PY ++KID
Sbjct: 30  IVYNDFYAHAVSYNPYPSEKID 51


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 536 KDACQGDSGGPLMQPIWNSQTYKTYFY 616
           K  C  D   P+  PI +  TYK Y Y
Sbjct: 910 KKFCNSDCELPVRSPIVSMSTYKDYVY 936


>SPCC1919.09 |tif6||translation initiation factor
           eIF6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +3

Query: 477 PYKNQKIDERVSALG 521
           P K Q++DER+SALG
Sbjct: 91  PVKIQRVDERLSALG 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,124
Number of Sequences: 5004
Number of extensions: 46559
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)