Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20813
(680 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0734 + 27648661-27649596 31 1.1
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290... 31 1.1
11_05_0079 + 18914668-18914753,18915123-18915338,18915829-189158... 30 1.5
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578... 30 2.0
06_03_0041 + 15810231-15810614 29 3.4
01_06_1104 - 34551466-34551572,34552019-34553057 29 3.4
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315 29 4.5
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 29 4.5
06_02_0035 + 10816723-10819497,10819964-10820011 28 7.9
03_02_0291 + 7148768-7148853,7148966-7149170,7149823-7150238,715... 28 7.9
01_01_0982 + 7770960-7771800,7771829-7772113,7773194-7773282 28 7.9
>04_04_0734 + 27648661-27649596
Length = 311
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +2
Query: 365 PHHSRLGGHRVPRSIRNAPPSPAAARGQQ--RLLCSSVLAI*ESEDR*EGLCAGYKKGGK 538
P+ R G+ +APP+PAAA Q+ R C + + S G A + +GG+
Sbjct: 142 PYRLRGAGYDDGSDGGDAPPAPAAAAAQKRTRFQCPACKKVFRSYQALGGHRASHMRGGR 201
Query: 539 DACQGDSGGPLMQP 580
C P P
Sbjct: 202 GGCCAPPPNPPPSP 215
>02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,
2907650-2907790,2907870-2908043,2908577-2908851,
2909592-2909755,2910409-2910536,2910628-2910734,
2911747-2911880,2912266-2912441,2912530-2914257,
2915084-2915239,2915328-2915486,2915581-2915751,
2915931-2916047,2916417-2916473,2916565-2916680,
2916790-2916916,2917862-2917945
Length = 2056
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 343 PAASRTTTPS*PAGGTQSSAVHPQRTSKSCSCPWSAT 453
PAA T P PAG TQS+AV Q + + P AT
Sbjct: 1989 PAADGGTAPGTPAGATQSTAVDTQEGTSQQTQPDIAT 2025
>11_05_0079 +
18914668-18914753,18915123-18915338,18915829-18915895,
18916656-18916723,18916999-18917125,18918240-18918339,
18918405-18918433,18918678-18918730,18919246-18919732
Length = 410
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 40 GGGVRWLCGGSLITSRHVLTAAHC 111
GGG RW C + H LT A C
Sbjct: 38 GGGTRWACAAPAYVAAHALTLALC 61
>12_02_0017 -
12357029-12357070,12357434-12357503,12357722-12357852,
12358836-12358882,12359762-12360044,12360547-12362413,
12362454-12362665
Length = 883
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 346 AASRTTTPS*PAGGTQSSAVHPQRTSKSCSCPWSATTFVL 465
A SR TPS T SSA P + + + PW A+T +L
Sbjct: 79 APSRHATPSSSPPSTPSSASAPPPSGRHPAFPWGASTHLL 118
>06_03_0041 + 15810231-15810614
Length = 127
Score = 29.1 bits (62), Expect = 3.4
Identities = 25/63 (39%), Positives = 28/63 (44%)
Frame = +2
Query: 269 GAGEGRTYYRLDQAYLHPQGHRASLPQLRGLQPHHSRLGGHRVPRSIRNAPPSPAAARGQ 448
GA R +D L G P+LR P L HR P S+ PPSPAAAR
Sbjct: 72 GAPAARALVGMD---LERVGPEPCCPRLR--LPLRHCLQPHRPPSSV--PPPSPAAARRH 124
Query: 449 QRL 457
RL
Sbjct: 125 PRL 127
>01_06_1104 - 34551466-34551572,34552019-34553057
Length = 381
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/88 (25%), Positives = 34/88 (38%)
Frame = -1
Query: 410 GWTAELCVPPAGYDGVVVLEAAGAKLCVLGDADRLDQVGNRYVLLQHQDADVLV*EAASY 231
GW A + P V++ E G CVLGD G L D S
Sbjct: 98 GWAARVAADPQFPFKVLMEELVGVSACVLGDMASRPNFG-----LNELDFVFSTLVVGSI 152
Query: 230 CSCLIFVLMRTSTGVAPSSSLARSNSPT 147
+ ++ L+ + G + ++S A S P+
Sbjct: 153 LNFVLMYLLAPTAGASAAASAAASGLPS 180
>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
Length = 678
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 179 SSSLARSNSPTRTKYRSSSWLCMQCAAVS 93
S++ +RS SPT + +SSW C A S
Sbjct: 632 SATASRSASPTSARPATSSWTCTSAATAS 660
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/67 (28%), Positives = 26/67 (38%)
Frame = +2
Query: 242 PLIPRHRHPGAGEGRTYYRLDQAYLHPQGHRASLPQLRGLQPHHSRLGGHRVPRSIRNAP 421
P +P + P A T +L A H H A P L +P PR + P
Sbjct: 159 PALPPTKAPAAISPATPPQLSPANAHSTHHHAKPPSLPPAEPPVPSPSPEHPPRHSPSKP 218
Query: 422 PSPAAAR 442
P+ A A+
Sbjct: 219 PAYAPAK 225
>06_02_0035 + 10816723-10819497,10819964-10820011
Length = 940
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 536 KDACQGDSGGPLMQPIWNSQTYKTYFY 616
+D G SGG L+ P +++ YK +FY
Sbjct: 465 RDDDNGHSGGGLILPATHAKRYKVFFY 491
>03_02_0291 +
7148768-7148853,7148966-7149170,7149823-7150238,
7150325-7150631,7150722-7151186
Length = 492
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 139 LVRVGELDLARDDEGATPVDVLIKTKIKHEQYD 237
LV+ G D+ DEG V +K + +H++++
Sbjct: 358 LVKTGRFDIVSKDEGVPLVAFSLKDRSRHDEFE 390
>01_01_0982 + 7770960-7771800,7771829-7772113,7773194-7773282
Length = 404
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 393 LCPPSRL*WGCSPRSCGSEALCPWG 319
+ PPS + C PR CG + + P G
Sbjct: 1 MAPPSWVILSCEPRVCGDDTVLPQG 25
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,704,469
Number of Sequences: 37544
Number of extensions: 416371
Number of successful extensions: 1618
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1617
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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