Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20813
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    43   3e-06
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.5  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   2.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   4.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.2  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 42.7 bits (96), Expect = 3e-06
 Identities = 22/60 (36%), Positives = 33/60 (55%)
 Frame = +1

Query: 58  LCGGSLITSRHVLTAAHCMHNHDDDLYLVRVGELDLARDDEGATPVDVLIKTKIKHEQYD 237
           +CG ++I+ R+VLTAAHC+ + +     + VGE D +   E    V   I   I H +YD
Sbjct: 187 ICGATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYD 246



 Score = 41.5 bits (93), Expect = 7e-06
 Identities = 24/73 (32%), Positives = 35/73 (47%)
 Frame = +3

Query: 255 DIGILVLEKDVPITDLIKPICIPKDTELRSRSFEDYNPIIAGWGDTEFRGPSATHLQVLQ 434
           DI +L  EKD+   D + P C+P    L   SF   +  + GWG T F G  +  LQ   
Sbjct: 257 DIALLKTEKDIKFGDKVGPACLPFQHFL--DSFAGSDVTVLGWGHTSFNGMLSHILQKTT 314

Query: 435 LPVVSNDFCAQAY 473
           L +++   C + Y
Sbjct: 315 LNMLTQVECYKYY 327



 Score = 40.3 bits (90), Expect = 2e-05
 Identities = 22/49 (44%), Positives = 31/49 (63%)
 Frame = +2

Query: 509 LCAGYKKGGKDACQGDSGGPLMQPIWNSQTYKTYFYQIGVVSFGKKCAE 655
           +CA Y KG KDACQ DSGGP+   +W +   K     IG++S+G +C +
Sbjct: 335 MCA-YAKG-KDACQMDSGGPV---LWQNPRTKR-LVNIGIISWGAECGK 377


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 16/62 (25%), Positives = 24/62 (38%)
 Frame = -2

Query: 454 SLLTTGSCRTWRCVADGPRNSVSPQPAMMGL*SSKLRERSSVSLGMQIGLIKSVIGTSFS 275
           S  TT S  T RC   GPR S   Q  M+      +   S+ +         +++    +
Sbjct: 287 SASTTCSGHTVRCFTGGPRKSHESQCPMLQKLEKPVLSSSTTTTSPMTSTKSTIVRNHLN 346

Query: 274 ST 269
           ST
Sbjct: 347 ST 348


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 485 ESEDR*EGLCAGYKKGGKDACQGDSGGPL 571
           ++ED  E +    KK      Q D GGPL
Sbjct: 420 DNEDHDENMIIPPKKSDMSNMQSDDGGPL 448


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 362 QPHHSRLGGHRVPRSIRNAPPSPAAARGQQRLLCSSVLA 478
           Q HH +L     P +I+    SPA A  +  L  ++V A
Sbjct: 12  QFHHQQLFSSANPGTIQACTTSPATASLESSLSAAAVAA 50


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 634 GDHSDLVEVGLVGLRVP 584
           G HS  V  G+VGL++P
Sbjct: 520 GVHSGAVVAGIVGLKMP 536


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 483 KNQKIDERVSALGTRRGARTPVRGTA 560
           +N KID RV+      GA   + GTA
Sbjct: 376 ENNKIDSRVTRFVVAVGATVNMDGTA 401


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 363 CSPRSCGSEALCPWGCR 313
           C   +C  E  CP GC+
Sbjct: 750 CDFDACDCEMTCPAGCK 766


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 14/73 (19%), Positives = 29/73 (39%)
 Frame = -1

Query: 221 LIFVLMRTSTGVAPSSSLARSNSPTRTKYRSSSWLCMQCAAVSTCLLVMREPPHSQRTXX 42
           LIF ++  S  +  +  +   +  +   ++ + W+      +   LLVMR P +   T  
Sbjct: 311 LIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIHILPRLLVMRRPQYKFETNR 370

Query: 41  XXXXXXXRFTIQG 3
                    T++G
Sbjct: 371 YSSGRVLMRTVRG 383


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 14/73 (19%), Positives = 29/73 (39%)
 Frame = -1

Query: 221 LIFVLMRTSTGVAPSSSLARSNSPTRTKYRSSSWLCMQCAAVSTCLLVMREPPHSQRTXX 42
           LIF ++  S  +  +  +   +  +   ++ + W+      +   LLVMR P +   T  
Sbjct: 311 LIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIHILPRLLVMRRPQYKFETNR 370

Query: 41  XXXXXXXRFTIQG 3
                    T++G
Sbjct: 371 YSSGRVLMRTVRG 383


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 346 AASRTTTPS*PAGGTQS 396
           AA  +T+PS P GG+ S
Sbjct: 74  AAITSTSPSYPGGGSSS 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,494
Number of Sequences: 438
Number of extensions: 3503
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)