Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20813
(680 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53235.1 68416.m05867 expressed protein 33 0.17
At3g52550.1 68416.m05782 hypothetical protein 29 2.8
At5g61840.1 68418.m07759 exostosin family protein contains Pfam ... 29 3.8
At4g21590.1 68417.m03126 bifunctional nuclease, putative similar... 29 3.8
At2g07070.1 68415.m00807 AT hook motif-containing protein contai... 28 5.0
At3g56410.2 68416.m06274 expressed protein 28 6.6
At3g56410.1 68416.m06273 expressed protein 28 6.6
At1g27440.1 68414.m03345 exostosin family protein contains Pfam ... 27 8.7
At1g09270.2 68414.m01036 importin alpha-1 subunit, putative (IMP... 27 8.7
At1g09270.1 68414.m01035 importin alpha-1 subunit, putative (IMP... 27 8.7
>At3g53235.1 68416.m05867 expressed protein
Length = 114
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 275 GEGRTYYRLDQAYLHPQGHRASLPQLRGLQPHHS 376
G GR Y DQ H Q R+++P RG+ HH+
Sbjct: 11 GGGRGIYTKDQRLHHVQKDRSAIPSTRGVDNHHN 44
>At3g52550.1 68416.m05782 hypothetical protein
Length = 178
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 385 GTQSSAVHPQRTSKSCSCPWSATTFVL 465
G +S + R SC+CPW+ +T L
Sbjct: 126 GESNSILEEMRNKDSCTCPWNPSTLSL 152
>At5g61840.1 68418.m07759 exostosin family protein contains Pfam
profile: PF03016 exostosin family ;supported by cDNA
gi|23821293|dbj|AB080693.1|;
Length = 415
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 249 YQDIGILVLEKDVPITDLIKPICIPKDTELRSR 347
++DIG+ V EKDVP D I IP + LR +
Sbjct: 321 WEDIGVFVDEKDVPYLDTIL-TSIPPEVILRKQ 352
>At4g21590.1 68417.m03126 bifunctional nuclease, putative similar to
bifunctional nuclease [Zinnia elegans]
gi|4099833|gb|AAD00694
Length = 294
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 193 QE*HLHRLWQDLILPPALST 134
QE +LHR+W D+I+ AL T
Sbjct: 171 QETNLHRVWDDMIIESALET 190
>At2g07070.1 68415.m00807 AT hook motif-containing protein contains
Pfam profile PF02178: AT hook motif
Length = 501
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = +2
Query: 218 SSTSNTMPPLIPRHRHPGAGEGRTYYRLDQAYLHPQGHRASLPQLRGLQPHHSRLGGHRV 397
SS+ + PP R G G R YY ++ + H + P +GL+ + H
Sbjct: 110 SSSEKSKPPTSTHSRGSG-GVSRNYYTPADNFVASKSHELTSPLEKGLEVSFRKEVFHYY 168
Query: 398 PRSIRN 415
P+ I +
Sbjct: 169 PQGIEH 174
>At3g56410.2 68416.m06274 expressed protein
Length = 1535
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +2
Query: 260 RHPG-AGEGRTYYRLDQAYLHPQGHRASLPQLRGLQPHHS 376
R PG +G+ Y+R Q+ LH + R PHHS
Sbjct: 279 RFPGETSDGKYYHRSSQSQLHDLQYHNLYEPSRSETPHHS 318
>At3g56410.1 68416.m06273 expressed protein
Length = 1488
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +2
Query: 260 RHPG-AGEGRTYYRLDQAYLHPQGHRASLPQLRGLQPHHS 376
R PG +G+ Y+R Q+ LH + R PHHS
Sbjct: 232 RFPGETSDGKYYHRSSQSQLHDLQYHNLYEPSRSETPHHS 271
>At1g27440.1 68414.m03345 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 412
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 249 YQDIGILVLEKDVPITDLIKPICIPKDTELRSR 347
+++IG+ V EKDVP D I IP + LR +
Sbjct: 318 WEEIGVFVAEKDVPELDTIL-TSIPTEVILRKQ 349
>At1g09270.2 68414.m01036 importin alpha-1 subunit, putative (IMPA4)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 538
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 264 ILVLEKDVPITDLIKPICIPKDTELRSRSFEDYNPIIAGWGDTEFRGPSATHLQVL 431
+L +E+ PI ++IK IP+ E R A W T ++ H +V+
Sbjct: 106 LLSIERSPPIDEVIKAGVIPRFVEFLGRHDHPQLQFEAAWALTNVASGTSDHTRVV 161
>At1g09270.1 68414.m01035 importin alpha-1 subunit, putative (IMPA4)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 538
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 264 ILVLEKDVPITDLIKPICIPKDTELRSRSFEDYNPIIAGWGDTEFRGPSATHLQVL 431
+L +E+ PI ++IK IP+ E R A W T ++ H +V+
Sbjct: 106 LLSIERSPPIDEVIKAGVIPRFVEFLGRHDHPQLQFEAAWALTNVASGTSDHTRVV 161
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,707,076
Number of Sequences: 28952
Number of extensions: 277259
Number of successful extensions: 919
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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