Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20812
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)                95   5e-20
SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)            27   0.59 
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)               30   2.3  
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   29   3.0  
SB_50787| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_43823| Best HMM Match : MAM (HMM E-Value=0)                         28   7.0  
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)                  28   7.0  
SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.3  
SB_36342| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)           28   9.3  

>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
          Length = 710

 Score = 95.1 bits (226), Expect = 5e-20
 Identities = 42/60 (70%), Positives = 50/60 (83%)
 Frame = +3

Query: 42  TTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKXGHAKV 221
           T   ++ DT F +G+SGAS T+P QCS+LRKNG V++KGRPCKIVEMSTSKTGK GHAKV
Sbjct: 585 TMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644



 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 29/62 (46%), Positives = 44/62 (70%)
 Frame = +2

Query: 320 QLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIA 499
           ++T+I +DGYL LM DNGD R D+K+ D D+  ++R  F++ +  + TVLK+ GEE V+ 
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASENFMVTVLKAMGEETVVG 702

Query: 500 VK 505
           VK
Sbjct: 703 VK 704


>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
          Length = 458

 Score = 26.6 bits (56), Expect(2) = 0.59
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = +1

Query: 106 SPCNVRPCVKTVSLC*RVVHARLLKCPHPKPEXTATLKFTWLGLISSMVKV*RY 267
           +PC ++ C + +S+    V   ++K P   P    TL   ++G  +  +K+ +Y
Sbjct: 398 NPCRIQYCTQEISMTPIHVLLLIVKAPILDPSLVVTLCSRFIGHQARKLKIVKY 451



 Score = 23.8 bits (49), Expect(2) = 0.59
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 88  PGPQPPSPCNVRP 126
           PGPQ P P N+ P
Sbjct: 362 PGPQDPGPGNILP 374


>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
          Length = 568

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 55  TSKTHTLRPETPGPQPPSPCNVRPCVKTVSLC*RVVH-ARLLKCPH 189
           T+K HT +P T  P    P N+ P + + +L   ++H     + PH
Sbjct: 168 TTKPHTTKPHTTKPHTTKPHNIDPTLPSPTLLNALLHFLYFYQAPH 213



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 7   HISFLTVVKFKTQQWVTSKTHTLRPETPGPQPPSPCNVRPC 129
           H   L   K KT +  T+K +T +P T  P+   P   +PC
Sbjct: 92  HTIKLYTTKPKTTKPHTNKPYTTKPRTTKPRTTKPHTTKPC 132


>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +1

Query: 43  QQWVTSKTHTLRPETPGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKP 198
           +Q V S      P  P P PP+PC + PC +T     +VVH+  L    P P
Sbjct: 126 EQHVVSHVMHPAPPPPPPPPPAPC-MPPCHQT-----QVVHSVQLHASPPGP 171


>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -1

Query: 522 VESCVALTAMTHSS----PQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSSRRSPLSAIR 355
           V  C  L A++  S    P+  S V + +LP+   V  C+P SPS I RS    P     
Sbjct: 235 VVECGGLRAISECSDPYPPRQISNVRSLTLPVRYQVIGCLP-SPSDIKRSVPYPPRQISN 293

Query: 354 VR 349
           VR
Sbjct: 294 VR 295


>SB_50787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 599

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -2

Query: 299 GVRPCCVWRDRYLHTFTIEDINPNQVNFSVAVLSGFGCGHFNNLAWTTLQHNETVFTQ 126
           G+R C    D  L  F   + +    + S A ++ +G GH N +    L H   + TQ
Sbjct: 243 GLRSCITHGDDLLSVFDNMESSSKVFDMSNAPVTRYGLGHVNQILEEELSHLRFLKTQ 300


>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1724

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -1

Query: 144  RNRFYAGPNIAW--GRWLRPRSLRSQSV 67
            R  F+  PN+A   G+WL P+SLR+  V
Sbjct: 947  REGFFNNPNLAGCKGQWLGPKSLRASRV 974


>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
          Length = 1058

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 22  TVVKFKTQQWVTSKTHTLRPETPGPQPPSPCNVRP 126
           +VV     + VT K  T +P TP P  P P   RP
Sbjct: 758 SVVAMPAARPVTPKPVTPKPVTPKPVTPKPVTTRP 792


>SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1226

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 738 RLRNASAK*GGEVLRVTSARGRAPRSPSTTSV 643
           R+R+AS K GGE + + SA GR+    +  SV
Sbjct: 338 RIRSASPKDGGEYMCIVSASGRSMTHSTFLSV 369


>SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +2

Query: 287 MDVPHVKREDYQLTDISDDGYLT----LMADNGDLREDLKIPDGDLGTQLRTDFDSGKEL 454
           +D+P+ K + + L  ++DD  L+    +  D   L E L  PD  +    R   D G E 
Sbjct: 37  LDIPYEKYDKFDLESLTDDECLSEFRFIKNDLYRLNEALNFPD-QITCPNRLTVD-GMEA 94

Query: 455 LCTVLKSCGEEC 490
           LC  L+     C
Sbjct: 95  LCMTLRRFAYPC 106


>SB_36342| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)
          Length = 872

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
 Frame = +2

Query: 263 DICPSTHNMDVPHVKREDYQLTDISDDGYLTLM----ADNGDLREDLKIPDGDLGTQLRT 430
           D+  S H +D+P+   E++    + +D  ++      +D   L E L+IPD    T  + 
Sbjct: 592 DLNTSNH-IDLPYNSYENFDFDILEEDECMSEFRFHKSDIPLLAEMLQIPDRL--TLYQR 648

Query: 431 DFDSGKELLCTVLKSCGEECVIAVKATQLSTNKP 532
              SG E LC VLK     C  A    + S   P
Sbjct: 649 SVCSGLEALCIVLKRLAYPCRYADMVAKFSRPVP 682


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,464,258
Number of Sequences: 59808
Number of extensions: 538760
Number of successful extensions: 1664
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1654
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)