Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20812
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g13950.1 68414.m01639 eukaryotic translation initiation facto... 103 1e-22
At1g26630.1 68414.m03243 eukaryotic translation initiation facto... 101 7e-22
At1g69410.1 68414.m07972 eukaryotic translation initiation facto... 100 1e-21
At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identic... 35 0.050
At1g56345.1 68414.m06477 pseudouridine synthase family protein l... 29 2.5
At5g14230.1 68418.m01663 ankyrin repeat family protein contains ... 29 3.3
At5g03140.1 68418.m00262 lectin protein kinase family protein co... 29 4.4
At3g51290.1 68416.m05614 proline-rich family protein 28 5.8
At2g33255.1 68415.m04075 haloacid dehalogenase-like hydrolase fa... 28 7.6
>At1g13950.1 68414.m01639 eukaryotic translation initiation factor
5A-1 / eIF-5A 1 identical to SP|Q9XI91 Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Arabidopsis thaliana}
Length = 158
Score = 103 bits (247), Expect = 1e-22
Identities = 46/85 (54%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Frame = +2
Query: 254 KYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD-LGTQLRT 430
K EDI PS+HN DVPHV R DYQL DIS+DGY++L+ DNG ++DLK+P+ D L Q+++
Sbjct: 69 KLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLLQQIKS 128
Query: 431 DFDSGKELLCTVLKSCGEECVIAVK 505
FD GK+L+ +V+ + GEE + A+K
Sbjct: 129 GFDDGKDLVVSVMSAMGEEQINALK 153
Score = 101 bits (243), Expect = 4e-22
Identities = 42/72 (58%), Positives = 55/72 (76%)
Frame = +3
Query: 60 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKXGHAKVHLVGID 239
E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK+VE+STSKTGK GHAK H V ID
Sbjct: 4 EEHHFESSDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63
Query: 240 IFNGKSMKISVP 275
IF K ++ VP
Sbjct: 64 IFTSKKLEDIVP 75
>At1g26630.1 68414.m03243 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similariy to
SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1
(eIF-5A 1) {Lycopersicon esculentum}
Length = 159
Score = 101 bits (241), Expect = 7e-22
Identities = 45/85 (52%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Frame = +2
Query: 254 KYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRT 430
K EDI PS+HN DVPHV R DYQL DI++DG+++L+ D+G ++DLK+P D L Q+R
Sbjct: 69 KLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMRL 128
Query: 431 DFDSGKELLCTVLKSCGEECVIAVK 505
FD GK+++ +V+ S GEE + AVK
Sbjct: 129 GFDEGKDIVVSVMSSMGEEQICAVK 153
Score = 93.1 bits (221), Expect = 2e-19
Identities = 39/72 (54%), Positives = 51/72 (70%)
Frame = +3
Query: 60 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKXGHAKVHLVGID 239
++ HFE +SGAS T+P +RK G +++K RPCK+VE+STSKTGK GHAK H V ID
Sbjct: 4 DEHHFEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63
Query: 240 IFNGKSMKISVP 275
IF K ++ VP
Sbjct: 64 IFTAKKLEDIVP 75
>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similarity to
eukaryotic initiation factor 5A (2) (Nicotiana
plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Lycopersicon esculentum}
Length = 158
Score = 100 bits (239), Expect = 1e-21
Identities = 45/85 (52%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
Frame = +2
Query: 254 KYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRT 430
K EDI PS+HN DVPHV R DYQL DIS+DG+++L+ DNG ++DLK+P D L TQL+
Sbjct: 69 KLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALLTQLKN 128
Query: 431 DFDSGKELLCTVLKSCGEECVIAVK 505
F+ GK+++ +V+ + GEE + A+K
Sbjct: 129 GFEEGKDIVVSVMSAMGEEQMCALK 153
Score = 98.3 bits (234), Expect = 5e-21
Identities = 41/72 (56%), Positives = 54/72 (75%)
Frame = +3
Query: 60 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKXGHAKVHLVGID 239
++ HFE+ D+GAS T+P Q +RK G +++KGRPCK+VE+STSKTGK GHAK H V ID
Sbjct: 4 DEHHFESSDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAID 63
Query: 240 IFNGKSMKISVP 275
IF K ++ VP
Sbjct: 64 IFTSKKLEDIVP 75
>At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identical
to gi|10880497|gb|AAG24278; supported by Ceres cDNA
265772
Length = 127
Score = 35.1 bits (77), Expect = 0.050
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3
Query: 663 TAEPSPSLTSLAIPHPLTSPTRSVVSPPA 749
TA P+PS+T P P +PT + VSPPA
Sbjct: 42 TAAPTPSITPTPTPTPSATPTAAPVSPPA 70
>At1g56345.1 68414.m06477 pseudouridine synthase family protein low
similarity to SP|P23851 Ribosomal large subunit
pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
synthase) (Uracil hydrolyase) {Escherichia coli};
contains Pfam profile PF00849: RNA pseudouridylate
synthase
Length = 322
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -3
Query: 469 QHGAQQFLAAVEVSTQLCAEVTIRDFEVLTQ-VTVVSHQGQVAIIRDISQLVVFALHVGY 293
+HGA + AA++V L +RD E + V+V S + + + D++ ++V G
Sbjct: 176 KHGAWRVYAALDVGRVLPGGSFVRDMETTFEVVSVNSVKNESCELEDVNHVIVAE---GE 232
Query: 292 VHVVCGGTD 266
+ CGG D
Sbjct: 233 RELSCGGDD 241
>At5g14230.1 68418.m01663 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 591
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +2
Query: 389 LKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEEC 490
L IPDGD T L G +C L SCG C
Sbjct: 412 LDIPDGDGYTPLMLAAREGHGHMCEYLISCGANC 445
>At5g03140.1 68418.m00262 lectin protein kinase family protein
contains Pfam domains, PF00138: Legume lectins alpha
domain, PF00139: Legume lectins beta domain and PF00069:
Protein kinase domain
Length = 711
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 160 RPFSITKPFLRRAEHCMGKVAEAPESPVSKCVSSMS 53
+P +T+P +R + A+ PE P++K SSMS
Sbjct: 631 QPDPVTRPTMRSVVQILVGEADVPEVPIAKPSSSMS 666
>At3g51290.1 68416.m05614 proline-rich family protein
Length = 602
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 37 KTQQWVTSKTHTLRPETPGPQPPSP 111
+T W T+ T ++ P P P PP P
Sbjct: 91 ETTTWTTTTTSSVLPPPPPPPPPPP 115
>At2g33255.1 68415.m04075 haloacid dehalogenase-like hydrolase
family protein contains InterPro accession IPR005834:
Haloacid dehalogenase-like hydrolase
Length = 224
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 341 HQRYQSVGSLRASRGVRPCCVWRDRYLHTFTIEDINPNQV 222
HQR++ + S R RP D LH + DI PN+V
Sbjct: 121 HQRFEVIFSPALGREFRPYKPNPDPLLHICSTWDIQPNEV 160
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,634,710
Number of Sequences: 28952
Number of extensions: 364893
Number of successful extensions: 1233
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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