BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20811 (765 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 28 1.3 SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 28 1.7 SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 27 2.9 SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 27 3.9 SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar... 26 6.8 SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.8 SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 26 6.8 SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 25 9.0 >SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1639 Score = 28.3 bits (60), Expect = 1.3 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +1 Query: 502 KSSHLYARKHWLRSSGM*IVTFLTPTTHTAMYLADATRCI*P 627 K+ +YA WL SG+ + + L +A+Y AD +C+ P Sbjct: 869 KNGIIYANAQWLSYSGLSLESSLGLGFLSAVYHADRKKCLLP 910 >SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 283 Score = 27.9 bits (59), Expect = 1.7 Identities = 12/40 (30%), Positives = 22/40 (55%) Frame = +3 Query: 534 ASLEWNVNCDIPNTDYAYSDVLGRCYKMYLTPMTWSEAYR 653 +S++W+ N + NTDY Y ++ C+ P+ + A R Sbjct: 187 SSMDWSCNMTLCNTDYPY--LVNTCFNGTQYPVNCNSALR 224 >SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr 1|||Manual Length = 599 Score = 27.1 bits (57), Expect = 2.9 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Frame = +1 Query: 430 DSHNNEDCVVIHRNDGLMN-DDDCAKSSHLYARKHWLRSSGM*IVTFLTPTTHT 588 D + E+ V+ +DG N D + +S LY R H SS M T LTP + T Sbjct: 253 DDDDEEEDEVVTDDDGTSNADSEVITASTLYER-HTAISSEMTSSTILTPPSLT 305 >SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 803 Score = 26.6 bits (56), Expect = 3.9 Identities = 8/17 (47%), Positives = 14/17 (82%) Frame = +3 Query: 576 DYAYSDVLGRCYKMYLT 626 D+ S+++GRC+ MY+T Sbjct: 420 DHPVSEIVGRCFVMYIT 436 >SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosaccharomyces pombe|chr 1|||Manual Length = 630 Score = 25.8 bits (54), Expect = 6.8 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = +2 Query: 128 ENKFFRKDYTYIESTESFYKIHTLYKKWVDAK 223 E KDYT E + F K +YKK D K Sbjct: 5 EESEINKDYTVQEDLDEFAKYTCVYKKRHDEK 36 >SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 773 Score = 25.8 bits (54), Expect = 6.8 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = -3 Query: 637 QVIGVKYIL*HRPSTSLYA*SVLGMSQFTFHSSEASVFL 521 +V +IL + STS+Y S+ G+S ++ H S L Sbjct: 268 EVQAPSHILMSKDSTSIYTISLEGLSIYSLHDESKSYML 306 >SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces pombe|chr 1|||Manual Length = 199 Score = 25.8 bits (54), Expect = 6.8 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = +1 Query: 241 GGYFLYPDDKFEFDAVTTYWNTTQPFEWISIGISSQTAKGVFETVDGVSI 390 G Y L+ + FD ++ T P+ W +GI+S A G+ G+ I Sbjct: 19 GLYMLFHNSGESFD-FGSFLLDTSPYTWGLLGIASCVAFGIIGAAWGIFI 67 >SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosaccharomyces pombe|chr 2|||Manual Length = 834 Score = 25.4 bits (53), Expect = 9.0 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = -2 Query: 188 FCKSSQLIRYTYSPYGKTYFPVVH 117 FCK S+ R TY K Y+ +H Sbjct: 471 FCKLSRTWRSTYEQCFKNYYETIH 494 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,183,316 Number of Sequences: 5004 Number of extensions: 67636 Number of successful extensions: 194 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 183 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 194 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 367316502 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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