Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20811
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    28   1.3  
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   1.7  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    27   2.9  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    27   3.9  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    26   6.8  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.8  
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...    26   6.8  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   9.0  

>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 502 KSSHLYARKHWLRSSGM*IVTFLTPTTHTAMYLADATRCI*P 627
           K+  +YA   WL  SG+ + + L     +A+Y AD  +C+ P
Sbjct: 869 KNGIIYANAQWLSYSGLSLESSLGLGFLSAVYHADRKKCLLP 910


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 534 ASLEWNVNCDIPNTDYAYSDVLGRCYKMYLTPMTWSEAYR 653
           +S++W+ N  + NTDY Y  ++  C+     P+  + A R
Sbjct: 187 SSMDWSCNMTLCNTDYPY--LVNTCFNGTQYPVNCNSALR 224


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 430 DSHNNEDCVVIHRNDGLMN-DDDCAKSSHLYARKHWLRSSGM*IVTFLTPTTHT 588
           D  + E+  V+  +DG  N D +   +S LY R H   SS M   T LTP + T
Sbjct: 253 DDDDEEEDEVVTDDDGTSNADSEVITASTLYER-HTAISSEMTSSTILTPPSLT 305


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +3

Query: 576 DYAYSDVLGRCYKMYLT 626
           D+  S+++GRC+ MY+T
Sbjct: 420 DHPVSEIVGRCFVMYIT 436


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 128 ENKFFRKDYTYIESTESFYKIHTLYKKWVDAK 223
           E     KDYT  E  + F K   +YKK  D K
Sbjct: 5   EESEINKDYTVQEDLDEFAKYTCVYKKRHDEK 36


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 637 QVIGVKYIL*HRPSTSLYA*SVLGMSQFTFHSSEASVFL 521
           +V    +IL  + STS+Y  S+ G+S ++ H    S  L
Sbjct: 268 EVQAPSHILMSKDSTSIYTISLEGLSIYSLHDESKSYML 306


>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 241 GGYFLYPDDKFEFDAVTTYWNTTQPFEWISIGISSQTAKGVFETVDGVSI 390
           G Y L+ +    FD   ++   T P+ W  +GI+S  A G+     G+ I
Sbjct: 19  GLYMLFHNSGESFD-FGSFLLDTSPYTWGLLGIASCVAFGIIGAAWGIFI 67


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 188 FCKSSQLIRYTYSPYGKTYFPVVH 117
           FCK S+  R TY    K Y+  +H
Sbjct: 471 FCKLSRTWRSTYEQCFKNYYETIH 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,183,316
Number of Sequences: 5004
Number of extensions: 67636
Number of successful extensions: 194
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)