Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20811
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0335 - 2706916-2706984,2707062-2707825,2710014-2710053,271...    32   0.58 
10_06_0130 - 11055305-11055593,11055666-11055949,11057271-110573...    28   7.1  
08_01_1069 + 10916376-10916448,10917331-10918031,10918222-109184...    28   9.4  

>01_01_0335 -
           2706916-2706984,2707062-2707825,2710014-2710053,
           2710105-2710173,2710268-2710336
          Length = 336

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +1

Query: 235 NGGGYFLYPDDKFEFDAVTTYWNTTQPFEWISIGISSQTAKGVFETVDGVSIM 393
           +G G +  P   F F+ VT    TT+ ++W+   I++QT  G    V   SIM
Sbjct: 247 SGNGGYQIPRG-FLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAASIM 298


>10_06_0130 -
           11055305-11055593,11055666-11055949,11057271-11057398,
           11058522-11058606,11058917-11060872
          Length = 913

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 590 AVCVVGVRNVTIHIPLERSQCFLAYKWEDFAQSSSFISPS 471
           AVC VG R +   +P +  + +L  K +DF  S   + PS
Sbjct: 655 AVCPVGDRRIMQILPDKNFKLYLHTKGDDFQHSLGCVKPS 694


>08_01_1069 +
           10916376-10916448,10917331-10918031,10918222-10918443,
           10918526-10919351,10919437-10919574,10920431-10920569,
           10920655-10920781,10921895-10921936,10922089-10922160,
           10922491-10922589,10922694-10922735,10922947-10923027,
           10923129-10923179,10923265-10923346,10923741-10923835,
           10924739-10924810,10924907-10925023,10925176-10925244,
           10925507-10925573,10925709-10925950
          Length = 1118

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = +1

Query: 382 VSIMDVYNKWKPGEPNDSHNNEDCVVIHRNDGLMNDDDCAKSSHLYARKHWLRSSGM*IV 561
           +S  +V   W PG   D     DCV++    G   +  C     +Y +   L +S    V
Sbjct: 186 ISRRNVSAVWPPG---DRALTLDCVILRNIPGFNGEGGCRPIFRIYGKDPLLATSNTPKV 242

Query: 562 TFLTP 576
            F TP
Sbjct: 243 LFSTP 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,776,439
Number of Sequences: 37544
Number of extensions: 413743
Number of successful extensions: 1048
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)