Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20811
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   1.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   1.0  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   7.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   7.2  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 606 CYKMYLTPMTWSEAYRVCSADQSYLAIINT 695
           CY++ +  + W+ A+ +  A  S L I+ T
Sbjct: 501 CYQLAINHIRWNSAFAIAPAVISCLGIVAT 530


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 606 CYKMYLTPMTWSEAYRVCSADQSYLAIINT 695
           CY++ +  + W+ A+ +  A  S L I+ T
Sbjct: 591 CYQLAINHIRWNSAFAIAPAVISCLGIVAT 620


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 398 CITNGSRASPTTLITTKIASSSIEMT 475
           CIT   R  PTT    +I    IE++
Sbjct: 384 CITESLRLIPTTTCIARILDEPIELS 409


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 401 YTSIMETPSTVSKTPLAVCDEI 336
           Y  I  TPS  S      CDEI
Sbjct: 313 YEGISSTPSQASSCSCLDCDEI 334


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = +3

Query: 567 PNTDYAYSDVLGRCYKMYLTPMTWSEAYRVC-SADQSYLAIINTKEE 704
           P+    Y D+L    K+    +  S+  RVC     S L  +N K +
Sbjct: 27  PDAKRLYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQ 73


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = +3

Query: 567 PNTDYAYSDVLGRCYKMYLTPMTWSEAYRVC-SADQSYLAIINTKEE 704
           P+    Y D+L    K+    +  S+  RVC     S L  +N K +
Sbjct: 27  PDAKRLYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQ 73


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -1

Query: 441 VMRVVGLARLPFVIHVHYGDTINSFEDSF 355
           ++  +   +L  +I + +GD + S  DSF
Sbjct: 514 ILNSLSATKLSKIILMQFGDKLESSHDSF 542


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -1

Query: 441 VMRVVGLARLPFVIHVHYGDTINSFEDSF 355
           ++  +   +L  +I + +GD + S  DSF
Sbjct: 552 ILNSLSATKLSKIILMQFGDKLESSHDSF 580


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,637
Number of Sequences: 438
Number of extensions: 4086
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)