Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20811
         (765 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22060.1 68414.m02759 expressed protein                             29   2.6  
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f...    29   3.4  
At3g55360.1 68416.m06148 3-oxo-5-alpha-steroid 4-dehydrogenase f...    28   7.8  

>At1g22060.1 68414.m02759 expressed protein
          Length = 1999

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
 Frame = +3

Query: 537  SLEWNVNCDIPNTDYAYSDVLGRCYKMYLTPMTWSEAYRVCSADQSYLAIINTKEEADHL 716
            SLE N+  +I + +      +     + L   +W   Y  C  ++  LA +  KE  +  
Sbjct: 818  SLEANLQ-NITHENLILLQKIDELESVVLESKSWKTNYETCICEKKELAELMEKEAVEKA 876

Query: 717  VNMTRLAPK----DKVRGKF 764
               TRLA      D VRGKF
Sbjct: 877  HYRTRLATVQAEFDAVRGKF 896


>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
           family protein / zinc finger (MYND type) family protein
           similar to ubiquitin-specific protease 16 (UBP16)
           [Arabidopsis thaliana] GI:11993477; contains Pfam
           profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
           PF01753: MYND finger
          Length = 731

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 280 RIQTCHQGKESSPLHFASLLSVHPFL 203
           R Q+ + GK S P+HF  LL + P++
Sbjct: 537 RFQSDNFGKLSKPIHFPELLDISPYM 562


>At3g55360.1 68416.m06148 3-oxo-5-alpha-steroid 4-dehydrogenase
           family protein / steroid 5-alpha-reductase family
           protein similar to synaptic glycoprotein SC2 spliced
           variant from Homo sapiens [EMBL:AF038958], SC2 from
           Rattus sp. [gi:256994]; contains Pfam
           3-oxo-5-alpha-steroid 4-dehydrogenase domain PF02544
          Length = 310

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 235 NGGGYFLYPDDKFEFDAVTTYWNTTQPFEWISIGISSQTAKG 360
           +G G +  P   F F+ VT    TT+ ++W+   I++QT  G
Sbjct: 224 SGAGGYQIPRG-FLFNIVTCANYTTEIYQWLGFNIATQTIAG 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,315,289
Number of Sequences: 28952
Number of extensions: 343818
Number of successful extensions: 840
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)