Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20810
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    29   0.55 
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    27   3.0  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    27   3.9  
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    26   6.8  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   6.8  

>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -2

Query: 326 SSQSTSKLRVGACSQLKKYECSTPVHRGMSNGVLGWHNSWDLVKLD--VSGPQRSIVPRT 153
           S   +SK  V   S+ K    STP+  GM+ GVL +  S +  K D  V+G   S V   
Sbjct: 380 SLSGSSKYSVN--SKAKMMSISTPMALGMNRGVLSFERSIEKRKNDYEVTGQSLSFVDDV 437

Query: 152 KLLP 141
            L P
Sbjct: 438 SLTP 441


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 506 WSGQVREPRSGPPPNVTRAIGLTP 577
           +SG ++E  S  PPN+TRA    P
Sbjct: 109 YSGALKEVSSNTPPNMTRAASQPP 132


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 716 HEWLYVVASHIVPFNAIIIE 657
           + WLY +    V FN I++E
Sbjct: 633 YRWLYTITKSFVDFNGIVVE 652


>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 1   VALHSRSLRTDYIK--AARARRSRSPQVRASVFHSLHQHYRDEPALLP 138
           V    RS R+D I+  A  ARR R   +   VF    + Y  +P LLP
Sbjct: 147 VVFIDRSRRSDAIQLFAKAARRMRKENISIWVFAEGTRSYSLKPCLLP 194


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 5/29 (17%)
 Frame = +2

Query: 392 FVKQRIA-----RGNIRYIWTSGRKCNFA 463
           ++KQR++      G IR IW  G+KC+ A
Sbjct: 147 YLKQRVSFIGDVPGEIRCIWRKGKKCHSA 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,352,394
Number of Sequences: 5004
Number of extensions: 71702
Number of successful extensions: 191
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)