Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20810
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0100 + 13389899-13390219,13390723-13390841,13391220-133913...    29   3.1  
08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811           29   4.1  
09_04_0532 + 18386593-18386722,18386826-18386900,18387098-183875...    28   9.4  

>07_03_0100 +
           13389899-13390219,13390723-13390841,13391220-13391315,
           13391481-13391553,13392055-13392123
          Length = 225

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -1

Query: 546 GGGPDLGSRT*PDQPFTFGGCRSPRSQP--AKLHLRPEVQM*RMFPRAILCF 397
           GG P L  R+ P++P  F   RSP ++    ++  R    M  M P    C+
Sbjct: 70  GGSPSLTRRSSPEKPGPFSQTRSPETEKMNKRVERRKRKYMVMMLPSTCCCW 121


>08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811
          Length = 359

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 151 NCCRQAKVPAHLCSVDEDCETRMRVLAENGYG 56
           +CC Q KV   L S +ED E  +R +  +GYG
Sbjct: 5   SCCNQQKVKRGLWSPEED-EKLIRYITTHGYG 35


>09_04_0532 +
           18386593-18386722,18386826-18386900,18387098-18387510,
           18387682-18387688,18387944-18388005,18388046-18388341,
           18388456-18388813,18388916-18389491,18389956-18390231
          Length = 730

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 7   LHSRSLRTDYIKAARARRSRSPQVRASVFHSLHQHYR 117
           L S+S+   Y K+ +ARR  +P+ R   + S+  H R
Sbjct: 502 LESQSMIDYYFKSGQARRDENPKFRNPKYLSMLNHLR 538


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,843,871
Number of Sequences: 37544
Number of extensions: 558514
Number of successful extensions: 1621
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1621
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)