Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20810
(768 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25882| Best HMM Match : 7tm_1 (HMM E-Value=0) 33 0.34
SB_40810| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_40213| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.1e-07) 31 0.77
SB_58330| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_30712| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66) 28 7.2
SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12) 28 7.2
SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82) 28 7.2
SB_42593| Best HMM Match : Rho_GDI (HMM E-Value=3.7e-17) 28 9.5
SB_19557| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_25882| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 390
Score = 32.7 bits (71), Expect = 0.34
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = -2
Query: 434 KCNVCFRERSFALQIRFPGVFLRKQRPCNLRQMFLASSQSTSKLRVGACSQLKKYECSTP 255
+CNVC + S LQ + K+ +LR F +SS+ S +R + S + S
Sbjct: 302 RCNVCVKFLSHGLQRKNTSKLHDKRSFYSLRVSFTSSSRLYSGIRRSSVSTRSIRKMSRD 361
Query: 254 VHRGMSN--GVLGWH 216
++ + N G +GWH
Sbjct: 362 RNQQVDNNIGTIGWH 376
>SB_40810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 31.5 bits (68), Expect = 0.77
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 630 ESCLAILNNFYNDGIKWHDVACHHVKPFVCEDSDEL 737
E C+ I +N+ + W D+ C P+VCE S +L
Sbjct: 126 EDCVQI--KIWNNTVTWADLGCETKLPYVCEKSRDL 159
>SB_40213| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.1e-07)
Length = 750
Score = 31.5 bits (68), Expect = 0.77
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +1
Query: 484 TASKCERL-VWSGSGAKIGPTTQRNTGDWSYTGGYGQAQLITEKLLKVTTSPVWRYLTTS 660
T +R+ VW+GSG T Q + D + TGG + L+++K + T+ V +L
Sbjct: 393 TEGNTDRMEVWTGSGLSDNYTGQVSWFDIADTGGC-RGTLVSDKRIMCITA-VHSHLV-- 448
Query: 661 IMMALNGTMWLATT*SHSC 717
+ +GT+W+ +H C
Sbjct: 449 VAGTQSGTLWIFDAWTHKC 467
>SB_58330| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 631
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 615 AQGNDESCLAILNNFYNDGIKWHDVACHHVKPFVCE 722
+ G ++ C+A++ + KWHD C + PF+C+
Sbjct: 359 SNGQEKDCVAMV--MHPSPGKWHDEYCLNQLPFICK 392
>SB_30712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 473 RGDLQPPNVNGWSGQVREPRSGPPPNVTRAIGLTPVATVK 592
R DL P N N W +V + PN+ +AI + V V+
Sbjct: 47 RLDLSPSNRNQWQKEVEIMKGLDHPNIVKAIDVPAVLDVR 86
>SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66)
Length = 1709
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 589 QAQLITEKLLKV-TTSPVWRYLTTSIMMALNGTMWLATT*SHSCAKTVMNYL 741
Q QL E++L + TSPV + LT ++ N W A H K ++ L
Sbjct: 1251 QLQLFVERILSLPVTSPVMKVLTGVELLLKNAQEWEANASRHVSIKAHLDAL 1302
>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
Length = 872
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +1
Query: 517 GSGAKIGPTTQRNTGDWSYTGGY-GQAQLITEKLLKVTTSPVWR--YLT 654
G G+ + P + +N G +Y G Y G A+L KL + +WR YLT
Sbjct: 796 GKGSDVKPFSWKNMGMLAYLGDYQGLAELPAGKLQGFKSWILWRSVYLT 844
>SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)
Length = 646
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 534 DLGSRT*PDQPFTFGGCRSPRSQPAKLHLRPEV 436
+L T PDQ G +PR+ P + H RP+V
Sbjct: 445 NLNDSTRPDQAPASSGNAAPRTPPRRRHPRPDV 477
>SB_42593| Best HMM Match : Rho_GDI (HMM E-Value=3.7e-17)
Length = 339
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -3
Query: 367 GNSVHAICGRCSLRPANPLLSCVLEHVPS*RNTNVVLPCIAVCRMAYSVGTTPGI 203
G +H + R +R P++ L + P+ +A C +AY VGT G+
Sbjct: 167 GLRLHNLFYRKGIRVGKPVVPAALMNRPTRGERRFAYWALAECILAYYVGTDEGV 221
>SB_19557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/71 (26%), Positives = 27/71 (38%)
Frame = -2
Query: 509 TNRSHLEAVGHRGHSRRNYIYDQKSKCNVCFRERSFALQIRFPGVFLRKQRPCNLRQMFL 330
T RSH + R S+ + +Y N C + F +R V CN+R F
Sbjct: 141 TKRSHERYLLQR-LSKSSAVYRMSPIANSCNGDEGFLSALRKSDVLFIALNSCNIRATFH 199
Query: 329 ASSQSTSKLRV 297
SK+ V
Sbjct: 200 RGQYQLSKINV 210
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,056,427
Number of Sequences: 59808
Number of extensions: 609292
Number of successful extensions: 2276
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2276
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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