Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20810
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   1.0  
AB264336-1|BAF44091.1|   21|Apis mellifera ecdysone-induced prot...    23   2.4  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   3.1  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   3.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   4.1  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   5.5  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   5.5  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   5.5  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   5.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   7.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.5  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 500 NGWSGQVREPRSGPPPNVTRAIGLTPVATV 589
           N +SG+   P  G PP+ TR   L  VATV
Sbjct: 435 NRFSGEYEIPAHGLPPSATR-YDLGAVATV 463


>AB264336-1|BAF44091.1|   21|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 21

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -2

Query: 257 PVHRGMSNGVLGWHNS 210
           P+ +G+ NGV+ +HN+
Sbjct: 6   PILKGILNGVVNYHNA 21


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 341 QMFLASSQSTSKLRV 297
           +MFL S Q TSKL++
Sbjct: 79  RMFLISQQKTSKLKI 93


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 341 QMFLASSQSTSKLRV 297
           +MFL S Q TSKL++
Sbjct: 62  RMFLISQQKTSKLKI 76


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -2

Query: 287 SQLKKYECSTPVHRGMSNGVLGWHNSWDLVKLDVSGPQRSIVPRTKLL 144
           + L + EC       M N +  +    D  ++D  GP     PRTK L
Sbjct: 316 NMLTQVECYKYYGNIMVNAMCAYAKGKDACQMDSGGPVLWQNPRTKRL 363


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 476 GDLQPPNVNGWSGQVREPRSGPPPNVTRAIG 568
           G +  P + GW+    E   G P  +TR  G
Sbjct: 165 GAISSPPLAGWNDWPEELEPGTPCQLTRRQG 195


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 476 GDLQPPNVNGWSGQVREPRSGPPPNVTRAIG 568
           G +  P + GW+    E   G P  +TR  G
Sbjct: 165 GAISSPPLAGWNDWPEELEPGTPCQLTRRQG 195


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +1

Query: 43  AARARRSRSPQVRASVFHSLHQHYRDEPALLPGGSS 150
           AAR   S  P V A+  H  HQ  +   A   G +S
Sbjct: 81  AARTTSSMYPYVSAAAAHHHHQQQQAVAAAAFGATS 116


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 476 GDLQPPNVNGWSGQVREPRSGPPPNVTRAIG 568
           G +  P + GW+    E   G P  +TR  G
Sbjct: 165 GAISSPPLAGWNDWPEELEPGTPCQLTRRQG 195


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -1

Query: 768 SPGSVIGQN*VVHHCLRT 715
           +PG V+G+  ++++C RT
Sbjct: 160 APGKVLGELAILYNCKRT 177


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 103 HQHYRDEPALLPGGSSFV 156
           H HYR  P L    SS+V
Sbjct: 363 HLHYRQPPTLSESYSSYV 380


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 539 GPILAPEPDQT 507
           GP+LAP PD T
Sbjct: 99  GPLLAPYPDWT 109


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 268 NVVLPCIAVCRMAYSVGTTPGIW*S*TSLGLS 173
           N++LPCI +  +A  V   P       +LG+S
Sbjct: 219 NLILPCILINSVALLVFYVPSESGEKVTLGIS 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,173
Number of Sequences: 438
Number of extensions: 5719
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)