Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20810
         (768 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63910.1 68414.m07236 myb family transcription factor (MYB103...    29   3.4  
At4g33350.1 68417.m04741 chloroplast inner membrane import prote...    28   7.9  
At3g19710.1 68416.m02496 branched-chain amino acid aminotransfer...    28   7.9  

>At1g63910.1 68414.m07236 myb family transcription factor (MYB103)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 370

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 151 NCCRQAKVPAHLCSVDEDCETRMRVLAENGYG 56
           +CC Q KV   L S +ED E  +R +  +GYG
Sbjct: 5   SCCNQQKVKRGLWSPEED-EKLIRYITTHGYG 35


>At4g33350.1 68417.m04741 chloroplast inner membrane import protein
           Tic22, putative similar to Tic22 [Pisum sativum]
           gi|3769671|gb|AAC64606
          Length = 268

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/61 (31%), Positives = 24/61 (39%)
 Frame = -3

Query: 508 PTVHIWRL*VTAVTAGEITFTTRSPNVTYVSASDPLLYKFVFLGCF*GNSVHAICGRCSL 329
           PT  +    V    AG   FT  + N  +V  SDP   K + L CF      A   +  L
Sbjct: 66  PTTTLSPSLVAKALAGTSVFTVSNTNNEFVLISDPTGGKSIGLLCFRQEDAEAFLAQARL 125

Query: 328 R 326
           R
Sbjct: 126 R 126


>At3g19710.1 68416.m02496 branched-chain amino acid
           aminotransferase, putative / branched-chain amino acid
           transaminase, putative (BCAT4) similar to branched-chain
           amino acid transaminase 6 [Arabidopsis thaliana]
           GI:13810195; contains Pfam profile: PF01063
           aminotransferase class IV
          Length = 354

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -1

Query: 576 GVRPIARVTLGGGPDLGSRT*PDQPFTFGGCRSPR--SQPAKLHLRPEVQM*RMFP 415
           G   I  +  G GP LGS   P+  FT   C   R     + L+L+ E Q  R FP
Sbjct: 136 GTLYIRPILFGSGPILGSFPIPETTFTAFACPVGRYHKDNSGLNLKIEDQFRRAFP 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,224,492
Number of Sequences: 28952
Number of extensions: 410247
Number of successful extensions: 1188
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)