Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20809
(764 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038... 49 5e-06
03_02_0441 - 8517501-8517701,8518004-8518139,8519995-8520107,852... 45 6e-05
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312... 35 0.082
02_04_0127 + 19992651-19993334,19993853-19993885,19994060-199941... 30 1.8
03_03_0266 - 16014740-16015045,16015566-16015601,16015623-160156... 29 3.1
07_01_0004 + 35300-35533,35617-35732,39044-39287,39451-40578,406... 29 5.4
01_07_0224 - 42121011-42122486 28 9.4
01_01_0421 + 3181139-3184207 28 9.4
>07_03_0997 -
23203166-23203330,23203627-23203693,23203771-23203862,
23204820-23204956,23205050-23205116,23205212-23205278,
23205356-23205441,23206061-23206153,23206337-23206522,
23207316-23207372,23207455-23207582,23207662-23207731,
23207815-23207950,23208378-23208529,23208606-23208680,
23208765-23208929,23209063-23209128,23209229-23209333,
23209929-23210132,23210462-23211715
Length = 1123
Score = 48.8 bits (111), Expect = 5e-06
Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Frame = +3
Query: 201 VLPEIAI*AADSAQRTIVLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFM 380
V P ++ + ++ ++ LQ D + + +KVCD +SELA + + N W E L F+
Sbjct: 99 VWPHLSPAGQAALKQHLLSALQSDPPKPIAKKVCDAISELAALLLPE---NAWAELLPFL 155
Query: 381 FTCASAQD-PNIKEAGIRMFTSVPGVFGNRQTENLDVIKGMLIS 509
F AS + PN++E+ + +F + ++L I +L S
Sbjct: 156 FRAASGPEAPNLQESALLIFARLADYIAESLLDHLMTIHNLLAS 199
Score = 38.7 bits (86), Expect = 0.005
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Frame = +1
Query: 4 FYQLLNTLLSTDNDIRSQAEDAYNNIP---TETKVVHLVNSIQNADIAEDVRQTAAVLLR 174
F LL+TL+S+ N R+ AE A++ + E + L +S+ + D+R AAVLLR
Sbjct: 21 FDALLSTLMSSSNADRAAAEAAFHRLRGSHPEPLALRLASSLSSPATPADLRAMAAVLLR 80
Query: 175 RLFS 186
+L S
Sbjct: 81 KLLS 84
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Frame = +2
Query: 617 DVLLPLMQVIVLSIEAADDDSA---LKVLIELAESTPKFLRPQLETI 748
D+L +M+ + + + + SA L++L+ELA + P+FLR Q+ +
Sbjct: 235 DLLPAMMRALTDCLNSGQEASAQEALELLVELAGAEPRFLRRQIADV 281
>03_02_0441 -
8517501-8517701,8518004-8518139,8519995-8520107,
8520189-8520284,8520376-8520590,8520675-8520797,
8520887-8520917,8521020-8521079,8521951-8522106,
8522185-8522274,8522347-8522562,8522671-8522805,
8522898-8523401,8523485-8523700,8524411-8524456,
8524542-8524678,8525059-8525191,8526084-8526358
Length = 960
Score = 45.2 bits (102), Expect = 6e-05
Identities = 26/105 (24%), Positives = 56/105 (53%)
Frame = +3
Query: 207 PEIAI*AADSAQRTIVLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFT 386
P++ A S ++ ++ ++ +D S +RR +VVS +A+ + +WPE L F+F
Sbjct: 69 PKLPPHAKASLKQALIDSITIDHSHLVRRASANVVSIIAKYAVPA---GEWPELLPFIFQ 125
Query: 387 CASAQDPNIKEAGIRMFTSVPGVFGNRQTENLDVIKGMLISLCSQ 521
C+ + + +E + +F+S+ G +L+ ++ +L+ C Q
Sbjct: 126 CSQSPQEDHREVALILFSSLTETIGTTFQSHLNDLQPILLK-CLQ 169
Score = 36.7 bits (81), Expect = 0.020
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +1
Query: 13 LLNTLLSTDNDIRSQAEDAYNNIPTETKVV-HLVNSIQNADIAEDVRQTAAVLLRR 177
LL L DND R QAE+ + + +VV LV+ ++ A +VRQ AAVLLR+
Sbjct: 8 LLIQFLMPDNDARRQAEEQIRRLARDPQVVPALVHHLRTAK-TPNVRQLAAVLLRK 62
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = +2
Query: 512 LQPNESMALRTQAVKAVGAFILLHDKEPIIQKHFSDVLLPLMQVIVLSIEAADDD---SA 682
LQ S +R A+KAVG+FI + + K F D + ++ V + ++D A
Sbjct: 168 LQDEASSRVRIAALKAVGSFIEYVNDGGDVVKIFRDFVPSILNVSRQCLANGEEDVASIA 227
Query: 683 LKVLIELAESTPKFLRPQLETIFQ 754
++ EL ES L + +I Q
Sbjct: 228 FEIFDELIESPAPLLGDSVRSIVQ 251
>03_05_0816 +
27928812-27930059,27931007-27931111,27931197-27931262,
27931337-27931501,27931671-27931745,27931829-27931983,
27932234-27932369,27932454-27932523,27932602-27932729,
27932838-27932894,27933326-27933511,27934031-27934123,
27934488-27934573,27934668-27934734,27934873-27934939,
27935016-27935152,27935618-27935709,27935849-27935915,
27936058-27936078
Length = 1006
Score = 34.7 bits (76), Expect = 0.082
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Frame = +2
Query: 611 FSDVLLPLMQVIVLSIEAADDDSA---LKVLIELAESTPKFLRPQLETI 748
F D+L +M+ + S+ ++ SA L+++IELA + P+FLR QL +
Sbjct: 223 FQDLLPAMMRALAESLNCGNEGSAQEALEMMIELAGAEPRFLRRQLPDV 271
>02_04_0127 +
19992651-19993334,19993853-19993885,19994060-19994128,
19994494-19994581,19994627-19995132,19995210-19995503,
19995557-19995906,19996020-19996456,19996718-19996743,
19996995-19997078
Length = 856
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/78 (24%), Positives = 35/78 (44%)
Frame = +2
Query: 497 HVNIALQPNESMALRTQAVKAVGAFILLHDKEPIIQKHFSDVLLPLMQVIVLSIEAADDD 676
HV + N ++ + A+ AF++ H + + + VL V+VL + AA D
Sbjct: 509 HVVGVVHTNYLEYIKREKNGALQAFLVKHINNWVTRAYCDKVLYLAQLVLVLRLSAATQD 568
Query: 677 SALKVLIELAESTPKFLR 730
++ + PKFL+
Sbjct: 569 LPKSIICNVHGVNPKFLK 586
>03_03_0266 -
16014740-16015045,16015566-16015601,16015623-16015643,
16016331-16016591,16017504-16018985,16019834-16019989,
16020154-16020277,16020399-16020615,16020877-16021774,
16022947-16023291,16023371-16023565,16023751-16024453,
16024866-16025467
Length = 1781
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +2
Query: 596 IIQKHFSDVLLPLMQVIVLSIEAADDDSALKVLIELAESTPKFLRP 733
++ HF ++ L+QV +S+ D+ L+++ ++ FLRP
Sbjct: 375 VVDGHFRALISQLLQVENISLHEGDETGWLEIVTSVSWEAANFLRP 420
>07_01_0004 +
35300-35533,35617-35732,39044-39287,39451-40578,
40657-40833
Length = 632
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 623 LLPLMQVIVLSIEAADDDSALKVLIELAESTPKFLRPQLETI 748
LLP ++ ++ E+ + SA + L+ L STP PQL I
Sbjct: 521 LLPSLKPLIPETESLVERSARETLMRLIASTPSASNPQLVNI 562
>01_07_0224 - 42121011-42122486
Length = 491
Score = 27.9 bits (59), Expect = 9.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 315 ELARNHIDDDGNNQWPEFLQFMF 383
+L ++D G +WP F+QF F
Sbjct: 7 DLGGGGVEDGGGKKWPGFVQFFF 29
>01_01_0421 + 3181139-3184207
Length = 1022
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 425 TSFFDVWILRTGTGKHELQELRPLVVAIVINM 330
T FD+ L TG HE Q + P + A+V N+
Sbjct: 187 TELFDMGYLYTGAYSHEWQLVLPNLTALVANL 218
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,427,397
Number of Sequences: 37544
Number of extensions: 377038
Number of successful extensions: 1002
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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