Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20809
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta...    52   4e-07
Z71267-2|CAA95849.1|  311|Caenorhabditis elegans Hypothetical pr...    31   0.68 
U61953-6|AAO91706.1|  341|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF099917-8|AAC68779.2|  457|Caenorhabditis elegans Hypothetical ...    29   2.7  
AC084158-40|AAM15618.2|  354|Caenorhabditis elegans Hypothetical...    29   4.8  
AC084158-39|AAM15616.2|  483|Caenorhabditis elegans Hypothetical...    29   4.8  
AC084158-38|AAM15617.2|  488|Caenorhabditis elegans Hypothetical...    29   4.8  
AC084158-37|AAM15615.2|  486|Caenorhabditis elegans Hypothetical...    29   4.8  
Z80220-4|CAB02307.2|  566|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
           family protein 3 protein.
          Length = 1092

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
 Frame = +3

Query: 231 DSAQRTIVLTLQMDLSQY---LRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQ 401
           ++ QR +   L+M + +    +++K+ D++SE+A N IDD G+  W   L+ M  C  ++
Sbjct: 79  ENKQRILAKVLEMIVHETELSIKKKIADLISEIASNLIDDSGDMTWGGVLELMDHCLKSE 138

Query: 402 DPNIKEAGIRMFTSVPGVFGNRQTENLDVIKGML 503
           D       + +    P +FGNR    L  +K +L
Sbjct: 139 DLTGNYIALLILRGCPIIFGNRLAHFLPTLKVVL 172



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 26/62 (41%), Positives = 33/62 (53%)
 Frame = +1

Query: 1   QFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAAVLLRRL 180
           QF +L+  L S DNDIR QAE+ Y  I   TKV  L  +  +     D R T  V LRR+
Sbjct: 5   QFTELITKLQSADNDIRKQAEEVYEKIEGPTKVAALFEAYTHHTNNSDARSTVLVFLRRV 64

Query: 181 FS 186
            +
Sbjct: 65  LA 66



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 22/78 (28%), Positives = 41/78 (52%)
 Frame = +2

Query: 530 MALRTQAVKAVGAFILLHDKEPIIQKHFSDVLLPLMQVIVLSIEAADDDSALKVLIELAE 709
           + ++  AV+AV AF + +D+E  + +  + ++  ++QV   + +  D D  L    ELA 
Sbjct: 181 LQIKATAVRAVIAFAVDNDEEKDVVRLMTSLVPNVLQVCNETSDEDDSDGPLGEFAELAS 240

Query: 710 STPKFLRPQLETIFQVCI 763
           S PK L   +  + QV +
Sbjct: 241 SLPKCLNTHMSQVLQVTL 258


>Z71267-2|CAA95849.1|  311|Caenorhabditis elegans Hypothetical
           protein W01A8.5 protein.
          Length = 311

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
 Frame = +3

Query: 339 DDGNNQWPEFLQFMFTCASAQD--PNIKEAGIRMFTSVPGVFGNRQTENLDVIKGML--- 503
           D  N +WP   +FM  CA+ ++  P + E    + + V        T   D  K +L   
Sbjct: 191 DSQNIRWPVIYRFMKACATLEEQMPALNELEAAVVSKVLDTIETEATTTPDTEKSILAGI 250

Query: 504 ISLCSQMNQWLCE 542
            S C Q N   CE
Sbjct: 251 FSECQQGNYRFCE 263


>U61953-6|AAO91706.1|  341|Caenorhabditis elegans Hypothetical
           protein R08C7.9 protein.
          Length = 341

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 526 FIWLQSDINMPFITSKFSV*RFPNTPG 446
           FIW  SD  +P +  KF V + PN PG
Sbjct: 85  FIWADSDERIPSVFVKFLVSQAPNDPG 111


>AF099917-8|AAC68779.2|  457|Caenorhabditis elegans Hypothetical
           protein F54D10.8 protein.
          Length = 457

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 548 PEFAKPLIHLAAKRY*HAFYHIQVFSLTISKYTWYRRKHSN 426
           PEF + L +    +  H +  + V   TI++Y W  R++ N
Sbjct: 408 PEFVESLSNAIVAKVQHVYCKVPVNCTTIARYLWESRQYPN 448


>AC084158-40|AAM15618.2|  354|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.1d protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -3

Query: 312 RLHHKPFFVSTGKDPFEG*EQLFSEHCPL-----LKWQFREELKEFCTK*SS*QHGRRLT 148
           RL+  P  VS  K  F    +  +E C +      KW  ++     CT+ +  QH RRL 
Sbjct: 140 RLYSLPKTVSINKLVFSNTPECEAEDCLIELMFIKKWTCKQLDYNICTEFNQPQHLRRLV 199

Query: 147 HIF 139
           H+F
Sbjct: 200 HMF 202


>AC084158-39|AAM15616.2|  483|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.1b protein.
          Length = 483

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -3

Query: 312 RLHHKPFFVSTGKDPFEG*EQLFSEHCPL-----LKWQFREELKEFCTK*SS*QHGRRLT 148
           RL+  P  VS  K  F    +  +E C +      KW  ++     CT+ +  QH RRL 
Sbjct: 140 RLYSLPKTVSINKLVFSNTPECEAEDCLIELMFIKKWTCKQLDYNICTEFNQPQHLRRLV 199

Query: 147 HIF 139
           H+F
Sbjct: 200 HMF 202


>AC084158-38|AAM15617.2|  488|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.1c protein.
          Length = 488

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -3

Query: 312 RLHHKPFFVSTGKDPFEG*EQLFSEHCPL-----LKWQFREELKEFCTK*SS*QHGRRLT 148
           RL+  P  VS  K  F    +  +E C +      KW  ++     CT+ +  QH RRL 
Sbjct: 145 RLYSLPKTVSINKLVFSNTPECEAEDCLIELMFIKKWTCKQLDYNICTEFNQPQHLRRLV 204

Query: 147 HIF 139
           H+F
Sbjct: 205 HMF 207


>AC084158-37|AAM15615.2|  486|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.1a protein.
          Length = 486

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -3

Query: 312 RLHHKPFFVSTGKDPFEG*EQLFSEHCPL-----LKWQFREELKEFCTK*SS*QHGRRLT 148
           RL+  P  VS  K  F    +  +E C +      KW  ++     CT+ +  QH RRL 
Sbjct: 143 RLYSLPKTVSINKLVFSNTPECEAEDCLIELMFIKKWTCKQLDYNICTEFNQPQHLRRLV 202

Query: 147 HIF 139
           H+F
Sbjct: 203 HMF 205


>Z80220-4|CAB02307.2|  566|Caenorhabditis elegans Hypothetical
           protein T08G11.4 protein.
          Length = 566

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 276 KDPFEG*EQLFSEHCPLLKWQFREELKEFCTK 181
           K+P    E ++++HC L+K Q   +  +F TK
Sbjct: 192 KNPESTFEDIYTKHCKLIKKQSENDFHDFQTK 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,066,383
Number of Sequences: 27780
Number of extensions: 346532
Number of successful extensions: 965
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)