Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20809
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p...    59   4e-09
At4g27640.1 68417.m03973 importin beta-2 subunit family protein ...    40   0.002
At2g47230.1 68415.m05898 agenet domain-containing protein contai...    36   0.022
At1g34220.1 68414.m04246 expressed protein  contains Pfam profil...    34   0.12 
At5g57020.1 68418.m07117 myristoyl-CoA:protein N-myristoyltransf...    29   4.5  
At5g16000.1 68418.m01871 leucine-rich repeat family protein / pr...    28   5.9  

>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
           protein contains Pfam profile: PF03130 PBS lyase
           HEAT-like repeat
          Length = 1116

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 35/151 (23%), Positives = 75/151 (49%), Gaps = 6/151 (3%)
 Frame = +3

Query: 84  NRNKSSAPSEFNSKCRHCRRCASNG-GRAVTKII*CRIL*-----VLPEIAI*AADSAQR 245
           N  K S P   + K  H  + + +  GRA+  ++  ++L      + P +++    S + 
Sbjct: 47  NLAKQSNPDTLSLKLAHLLQLSPHPEGRAMAAVLLRKLLTRDDAYLWPRLSLSTQSSLKS 106

Query: 246 TIVLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEAG 425
           +++  +Q + ++ + +K+CD VSELA   + ++G   WPE L F+F C ++  P ++E+ 
Sbjct: 107 SMLYCIQHEEAKSISKKICDTVSELASGILPENG---WPELLPFVFQCVTSVTPKLQESA 163

Query: 426 IRMFTSVPGVFGNRQTENLDVIKGMLISLCS 518
             +   +    G   T ++  + G+ +   S
Sbjct: 164 FLILAQLSQYVGETLTPHIKELHGVFLQCLS 194



 Score = 33.5 bits (73), Expect = 0.16
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
 Frame = +2

Query: 527 SMALRTQAVKAVGAFI--LLHDKEPIIQKHFSDVLLPLMQVIVLSIEAADD---DSALKV 691
           S  ++  A+ AV +F+  L +  E   +  F DVL  +++ +  S+   ++     AL++
Sbjct: 199 SSDVKIAALNAVISFVQCLANSTE---RDRFQDVLPAMIRTLTESLNNGNEATAQEALEL 255

Query: 692 LIELAESTPKFLRPQLETI 748
           LIELA + P+FLR QL  I
Sbjct: 256 LIELAGTEPRFLRRQLVDI 274


>At4g27640.1 68417.m03973 importin beta-2 subunit family protein low
           similarity to importin 4 GI:18700635 from [Homo sapiens]
          Length = 1048

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 18/75 (24%), Positives = 43/75 (57%)
 Frame = +3

Query: 240 QRTIVLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKE 419
           +++++ ++ ++ S  +RR   +VVS +A+  +      +WP+ L F+F C+ +   + +E
Sbjct: 80  KQSLIESITVENSPPVRRASANVVSVVAKYAVPA---GEWPDLLTFLFQCSQSAQEDHRE 136

Query: 420 AGIRMFTSVPGVFGN 464
             + +F+S+    GN
Sbjct: 137 VALILFSSLTETIGN 151



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +1

Query: 13  LLNTLLSTDNDIRSQAEDAYNNIPTETKVV-HLVNSIQNADIAEDVRQTAAVLLRR 177
           LL   L  DND R QAED    +  + +VV  LV  ++ A    +VRQ AAVLLR+
Sbjct: 8   LLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAK-TPNVRQLAAVLLRK 62



 Score = 32.7 bits (71), Expect = 0.28
 Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
 Frame = +2

Query: 512 LQPNESMALRTQAVKAVGAFI-LLHDKEPIIQKHFSDVLLPLMQVIVLSIEAADDDSAL- 685
           +Q   S  +R  A+KAVG+F+   +D + +++  F D +  ++ V    I + ++D A+ 
Sbjct: 168 MQDESSSRVRVAALKAVGSFLEFTNDGDEVVK--FRDFIPSILDVSRKCIASGEEDVAIL 225

Query: 686 --KVLIELAESTPKFLRPQLETIFQ 754
             ++  EL ES    L   ++ I Q
Sbjct: 226 AFEIFDELIESPAPLLGDSVKAIVQ 250


>At2g47230.1 68415.m05898 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 701

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +1

Query: 16  LNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAA 162
           +N   S  ND+  Q   A+ N+PTET + H    + NA IA DV +  A
Sbjct: 459 INDTSSICNDVDDQPLAAWINLPTETSIDHSPIVVNNAAIATDVEERQA 507


>At1g34220.1 68414.m04246 expressed protein  contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 649

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 18/66 (27%), Positives = 41/66 (62%)
 Frame = +2

Query: 512 LQPNESMALRTQAVKAVGAFILLHDKEPIIQKHFSDVLLPLMQVIVLSIEAADDDSALKV 691
           L+P+  +  +T+++  +  F L+  ++  +  +FS+ +L L++  +LS+ A   ++ LK+
Sbjct: 144 LKPDSGVNRKTESLIFIAWFSLVETRDLFMFLYFSNSILQLVE--LLSVRAPSPETKLKL 201

Query: 692 LIELAE 709
           L E+AE
Sbjct: 202 LKEIAE 207


>At5g57020.1 68418.m07117 myristoyl-CoA:protein
           N-myristoyltransferase 1 (NMT1) identical to
           N-myristoyltransferase 1 (NMT1) [Arabidopsis thaliana]
           GI:7339834
          Length = 434

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 4   FYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVN 114
           FY L +T+L   N    +A  +Y N+ T+T  + L+N
Sbjct: 337 FYTLPSTILGNPNYTTLKAAYSYYNVATQTSFLQLMN 373


>At5g16000.1 68418.m01871 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 638

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = -1

Query: 485 IQVFSLTISKYTWYRRKHSNTSFFDV 408
           + +  + +  + W+R++H+  +FFDV
Sbjct: 258 VSLIFIAVGLFLWWRQRHNQNTFFDV 283


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,903,648
Number of Sequences: 28952
Number of extensions: 312258
Number of successful extensions: 892
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)