Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20808
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    28   1.7  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    28   1.7  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    27   3.0  
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    26   5.2  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   6.9  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    25   9.2  
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    25   9.2  
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    25   9.2  

>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 620 PTGFGTLIQEGGSPIKYTKEGKEKCQELQ 706
           PTG   ++ +G   IK TK+GK    E+Q
Sbjct: 38  PTGTTKMLVDGAGAIKLTKDGKVLLTEMQ 66


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 746 FCYSYTSSPAHSWIEVPGTFPFLP 675
           F YSYT     +W  V GT  +LP
Sbjct: 522 FPYSYTGDEISTWFSVQGTLFYLP 545


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 523 CLSNSHFLQHMRRSSFLSVYF*EEYPSQNLQHQHC 419
           C S   F+QH+  S  LS +  + YP ++    HC
Sbjct: 402 CTSLEVFIQHITLSRILSHFVRKVYPVKSPSDSHC 436


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
 Frame = +1

Query: 319 SKLLVGGFGLCGIPENLIKALNIK-KVSA--LTVVSNNAGV--EDFGLGILLKSKQIKRM 483
           ++L++ G+    + + L K + I  K+SA  ++++S  AG+    FG+G+L+ S  +   
Sbjct: 401 NQLVIAGYREATMLKELEKIIPIAAKLSAFFVSILSVIAGIFASTFGVGVLIASALVYAS 460

Query: 484 ISSYVGENGNL 516
               VG N +L
Sbjct: 461 FEMIVGANTSL 471


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 388 KKVSALTVVSNNAGVEDFGLG 450
           K  S L+  + NAGV DFGLG
Sbjct: 764 KSQSMLSANNLNAGVNDFGLG 784


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1429

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = +1

Query: 286  AQEAVQDVSDGSKLLVGGFGLCGIPENLIKALNIKKVSALTVVSNNAGVEDFGLGILLKS 465
            A   +   + G+KL+VGG G  G    L     I  V +  V     GV   G  I+  +
Sbjct: 1208 ADNFLHAANKGAKLVVGGVGAAG-GLALAGVTTIGSVGSKAVTGVADGVTGTGKHIISGA 1266

Query: 466  KQIKRM 483
            K I +M
Sbjct: 1267 KGISKM 1272


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 164 MTLTIRKLLDANYSKLVNSIGKIKSCATY 250
           M  TI  LLD + S  + SI  IKSC  Y
Sbjct: 154 MATTIASLLDFSLSDPLCSIQYIKSCQRY 182


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 758 NFLHFCYSYTSSPAHSWIEVPGTFPFLPWYI*LVTRLPELK 636
           NF H  Y Y  S   +  +   T P  P  I L T+ PE++
Sbjct: 58  NFSHGSYEYHQSVIDNARKASATNPLFPLAIALDTKGPEIR 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,109,218
Number of Sequences: 5004
Number of extensions: 64472
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)