BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20808 (777 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 28 1.7 SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 28 1.7 SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 27 3.0 SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi... 26 5.2 SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 26 6.9 SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 25 9.2 SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni... 25 9.2 SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch... 25 9.2 >SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit Cct6|Schizosaccharomyces pombe|chr 2|||Manual Length = 535 Score = 27.9 bits (59), Expect = 1.7 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +2 Query: 620 PTGFGTLIQEGGSPIKYTKEGKEKCQELQ 706 PTG ++ +G IK TK+GK E+Q Sbjct: 38 PTGTTKMLVDGAGAIKLTKDGKVLLTEMQ 66 >SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizosaccharomyces pombe|chr 1|||Manual Length = 606 Score = 27.9 bits (59), Expect = 1.7 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = -2 Query: 746 FCYSYTSSPAHSWIEVPGTFPFLP 675 F YSYT +W V GT +LP Sbjct: 522 FPYSYTGDEISTWFSVQGTLFYLP 545 >SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster type |Schizosaccharomyces pombe|chr 2|||Manual Length = 827 Score = 27.1 bits (57), Expect = 3.0 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -3 Query: 523 CLSNSHFLQHMRRSSFLSVYF*EEYPSQNLQHQHC 419 C S F+QH+ S LS + + YP ++ HC Sbjct: 402 CTSLEVFIQHITLSRILSHFVRKVYPVKSPSDSHC 436 >SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schizosaccharomyces pombe|chr 2|||Manual Length = 475 Score = 26.2 bits (55), Expect = 5.2 Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 5/71 (7%) Frame = +1 Query: 319 SKLLVGGFGLCGIPENLIKALNIK-KVSA--LTVVSNNAGV--EDFGLGILLKSKQIKRM 483 ++L++ G+ + + L K + I K+SA ++++S AG+ FG+G+L+ S + Sbjct: 401 NQLVIAGYREATMLKELEKIIPIAAKLSAFFVSILSVIAGIFASTFGVGVLIASALVYAS 460 Query: 484 ISSYVGENGNL 516 VG N +L Sbjct: 461 FEMIVGANTSL 471 >SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 855 Score = 25.8 bits (54), Expect = 6.9 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +1 Query: 388 KKVSALTVVSNNAGVEDFGLG 450 K S L+ + NAGV DFGLG Sbjct: 764 KSQSMLSANNLNAGVNDFGLG 784 >SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1429 Score = 25.4 bits (53), Expect = 9.2 Identities = 20/66 (30%), Positives = 28/66 (42%) Frame = +1 Query: 286 AQEAVQDVSDGSKLLVGGFGLCGIPENLIKALNIKKVSALTVVSNNAGVEDFGLGILLKS 465 A + + G+KL+VGG G G L I V + V GV G I+ + Sbjct: 1208 ADNFLHAANKGAKLVVGGVGAAG-GLALAGVTTIGSVGSKAVTGVADGVTGTGKHIISGA 1266 Query: 466 KQIKRM 483 K I +M Sbjct: 1267 KGISKM 1272 >SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit Cwg2|Schizosaccharomyces pombe|chr 1|||Manual Length = 355 Score = 25.4 bits (53), Expect = 9.2 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +2 Query: 164 MTLTIRKLLDANYSKLVNSIGKIKSCATY 250 M TI LLD + S + SI IKSC Y Sbjct: 154 MATTIASLLDFSLSDPLCSIQYIKSCQRY 182 >SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 509 Score = 25.4 bits (53), Expect = 9.2 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = -2 Query: 758 NFLHFCYSYTSSPAHSWIEVPGTFPFLPWYI*LVTRLPELK 636 NF H Y Y S + + T P P I L T+ PE++ Sbjct: 58 NFSHGSYEYHQSVIDNARKASATNPLFPLAIALDTKGPEIR 98 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,109,218 Number of Sequences: 5004 Number of extensions: 64472 Number of successful extensions: 173 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 160 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 173 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 375345278 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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