Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20808
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0301 + 2011707-2015423,2016982-2017182,2017670-2017786,201...    29   5.4  
11_01_0360 - 2742955-2743072,2743451-2743597,2743682-2743773,274...    28   7.2  
06_03_0589 - 22572914-22573035,22573353-22573412,22573554-22573692     28   7.2  
07_03_0758 - 21292205-21293329                                         28   9.5  
01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266     28   9.5  

>02_01_0301 +
           2011707-2015423,2016982-2017182,2017670-2017786,
           2018030-2018122
          Length = 1375

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 134 CEVPVSLSFIMTLTIRKLLDANYSKLVNSIGKIKSCATYAKLFV 265
           C+ P+S  FI  L+    L  + +K++N + ++KS    AK F+
Sbjct: 114 CQGPISNPFIWVLSNISSLSPHNTKMLNHLKEVKSILEKAKNFL 157


>11_01_0360 -
           2742955-2743072,2743451-2743597,2743682-2743773,
           2744408-2744507,2744590-2744790,2745254-2745459,
           2745619-2746045,2746172-2746411,2746514-2746719,
           2747081-2747176,2747348-2747521
          Length = 668

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 629 FGTLIQEGGSPIKYTKEGKEKCQELQSSYVQG 724
           FG L++ G +P KY +   E  ++L   + +G
Sbjct: 629 FGNLVENGKNPHKYVRYSPEMVEQLLGEFFEG 660


>06_03_0589 - 22572914-22573035,22573353-22573412,22573554-22573692
          Length = 106

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 675 LVYLIGDPPS*IKVPNPVGVKKAGIPAPPARILSASVPAVSIL 547
           + Y  GDPPS      PV V  + +PA PA     + PAV ++
Sbjct: 12  VAYSSGDPPS----ATPVPVPGSDLPAAPAAKSQEASPAVPVI 50


>07_03_0758 - 21292205-21293329
          Length = 374

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 392 FFILRALIRFSGIPQSPKPP 333
           FF  R L++ SG+P SP PP
Sbjct: 277 FFSGRPLLQLSGLPPSPPPP 296


>01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266
          Length = 272

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -1

Query: 690 FSFPSLVYLIGDPPS*IKVPNPVGVKKAGIPAPPARIL-SASVPAV 556
           ++ PS   L   PPS  +   PV    A +PAP    L  ASVP +
Sbjct: 28  YAAPSATVLPARPPSPPRASIPVSTSPAPLPAPAKPSLPGASVPII 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,290,840
Number of Sequences: 37544
Number of extensions: 405635
Number of successful extensions: 1133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)