Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20808
         (777 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32524| Best HMM Match : CoA_trans (HMM E-Value=1.26117e-44)         75   5e-14
SB_34041| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.3  
SB_38034| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  
SB_369| Best HMM Match : Pox_A32 (HMM E-Value=0.2)                     28   9.7  
SB_53151| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  
SB_44762| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  

>SB_32524| Best HMM Match : CoA_trans (HMM E-Value=1.26117e-44)
          Length = 318

 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 35/54 (64%), Positives = 40/54 (74%)
 Frame = +1

Query: 268 SKIYASAQEAVQDVSDGSKLLVGGFGLCGIPENLIKALNIKKVSALTVVSNNAG 429
           +K Y +  EA++D+ D  KLLVGGFGLCGIPENLI ALN   V  LT VSNNAG
Sbjct: 38  AKFYNTPDEAIKDIPDNCKLLVGGFGLCGIPENLIIALNASGVKGLTCVSNNAG 91



 Score = 33.1 bits (72), Expect = 0.26
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +3

Query: 687 KSARNFNPAMCRAARVTIAEVEEIIVKL 770
           KSARNFN  M +AA+VTIAE +   V++
Sbjct: 92  KSARNFNAPMGKAAKVTIAEQDSRYVEV 119


>SB_34041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 951

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 310 SDGSKLLVGGFGLCGIPENLIKALNIKKVSALTVVSNN 423
           S   K  +G  GL GIPE    A N KK   L ++ NN
Sbjct: 608 SKNGKPAMGDQGLSGIPEVETSACNDKKTPILGILKNN 645


>SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1499

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = -1

Query: 681  PSLVYLIGDPPS*IKVPNPVGVKKAGIPAPPARILSASVPAVSI---LPLILHLKIVFQI 511
            P  V +   PP  +    P+ V+      PP R+  A+ P V +    PL L++ ++  +
Sbjct: 844  PVRVTVATPPPVRVPAATPLPVRVPVATLPPVRLPVATPPPVRVPVATPLPLYVFLLLPL 903

Query: 510  PIF 502
            P+F
Sbjct: 904  PLF 906


>SB_38034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = +1

Query: 244 DLCQIIRKSKIYASAQEAVQDVSDGSKLLVGGFGLCGI-PENLIKALNIKK----VSALT 408
           D+C  + +S     A+  VQ   +G  L +  F  CG+ P ++   +N+ K    ++ L 
Sbjct: 600 DVCHCLYESASEMEAKALVQGKLEGMDLNIVDFSKCGLGPADMSAVVNVLKHAPNLNTLL 659

Query: 409 VVSNNAGV 432
           +  N+ G+
Sbjct: 660 ITHNDIGL 667


>SB_369| Best HMM Match : Pox_A32 (HMM E-Value=0.2)
          Length = 856

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 562 RYTGRKNTCRRCRYSCLFYTYW 627
           R+  RKN CRRCR  C F T++
Sbjct: 761 RHELRKNDCRRCR-CCRFITHY 781


>SB_53151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 352 GIPENLIKALNIKKVSALTVVSNNA 426
           G+P N+ KAL I+K S++T    NA
Sbjct: 389 GMPSNINKALQIRKTSSMTSPKANA 413


>SB_44762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 892

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 562 RYTGRKNTCRRCRYSCLFYTYW 627
           R+  RKN CRRCR  C F T++
Sbjct: 724 RHELRKNDCRRCR-CCRFITHY 744


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,256,909
Number of Sequences: 59808
Number of extensions: 445935
Number of successful extensions: 1430
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1429
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)