Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20808
         (777 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ618922-1|CAF02001.1|  272|Anopheles gambiae odorant-binding pr...    25   2.6  
DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1 pro...    24   6.0  

>AJ618922-1|CAF02001.1|  272|Anopheles gambiae odorant-binding
           protein OBPjj5a protein.
          Length = 272

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
 Frame = +1

Query: 379 LNIKKVSALTVVSNNAGVEDFGLGI---LLKSKQIKRMISSYVGENGNLKDNF*VEN*R* 549
           +N++++S    V   A  E  G  +   L +  + +        E  N+++NF +     
Sbjct: 91  INVEQISTNQAVYGEAYQEAIGKAVDACLAQRDEFREQEKFTKSECVNIRNNFHLPKSNR 150

Query: 550 N*H---RRYTGRKNTCRR-CRYSCLF 615
           N     RR    +NTCRR C   C++
Sbjct: 151 NCRTAARRNHSSRNTCRRNCYQQCIY 176


>DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1
           protein.
          Length = 545

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 684 FPSLVYLIGDPPS*IKVPNPVGVKKAGIPA 595
           F   V +IGDPP  +  PN   V+   +PA
Sbjct: 161 FLHTVNIIGDPPRPVGAPNFEYVEFGRVPA 190


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 775,577
Number of Sequences: 2352
Number of extensions: 16210
Number of successful extensions: 27
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81081585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)