Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20808
         (777 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058254-1|AAL13483.1|  516|Drosophila melanogaster GH01464p pro...   108   7e-24
AE014296-399|AAF47600.1|  516|Drosophila melanogaster CG1140-PA,...   108   7e-24
AE014296-398|AAN11508.1|  502|Drosophila melanogaster CG1140-PB,...   108   7e-24
BT001845-1|AAN71606.1|  143|Drosophila melanogaster RH54340p pro...    74   3e-13
BT016021-1|AAV36906.1|  662|Drosophila melanogaster RE15373p pro...    30   3.1  
AE014298-2002|AAN09579.1|  662|Drosophila melanogaster CG11584-P...    30   3.1  

>AY058254-1|AAL13483.1|  516|Drosophila melanogaster GH01464p
           protein.
          Length = 516

 Score =  108 bits (260), Expect = 7e-24
 Identities = 50/85 (58%), Positives = 63/85 (74%)
 Frame = +1

Query: 262 RKSKIYASAQEAVQDVSDGSKLLVGGFGLCGIPENLIKALNIKKVSALTVVSNNAGVEDF 441
           R  KIY SA +AV DV DG+++L GGFG+CGIPE +I AL  K V  +T VSNN GV+D 
Sbjct: 32  RNGKIYESAIDAVADVQDGAQILFGGFGICGIPEKMINALKQKGVKNITGVSNNGGVDDT 91

Query: 442 GLGILLKSKQIKRMISSYVGENGNL 516
           GLG+L+K KQ+ ++I SYVGEN  L
Sbjct: 92  GLGVLIKQKQVSKVIGSYVGENTEL 116



 Score = 79.8 bits (188), Expect = 4e-15
 Identities = 33/41 (80%), Positives = 40/41 (97%)
 Frame = +2

Query: 563 GTLAERIRAGGAGIPAFFTPTGFGTLIQEGGSPIKYTKEGK 685
           GTLAE+IRAGGAGIPAF+TPTG+ TL+QEGG+PIKY+K+GK
Sbjct: 133 GTLAEKIRAGGAGIPAFYTPTGYATLVQEGGAPIKYSKDGK 173



 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 18/25 (72%), Positives = 23/25 (92%)
 Frame = +3

Query: 687 KSARNFNPAMCRAARVTIAEVEEII 761
           K+ARNFN  MCRAA++T+AEVEEI+
Sbjct: 219 KAARNFNAPMCRAAKITVAEVEEIV 243



 Score = 29.9 bits (64), Expect = 4.1
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +3

Query: 510 EFERQFLSGELEVELTPQ 563
           E  RQ+L GEL VELTPQ
Sbjct: 115 ELVRQYLEGELAVELTPQ 132


>AE014296-399|AAF47600.1|  516|Drosophila melanogaster CG1140-PA,
           isoform A protein.
          Length = 516

 Score =  108 bits (260), Expect = 7e-24
 Identities = 50/85 (58%), Positives = 63/85 (74%)
 Frame = +1

Query: 262 RKSKIYASAQEAVQDVSDGSKLLVGGFGLCGIPENLIKALNIKKVSALTVVSNNAGVEDF 441
           R  KIY SA +AV DV DG+++L GGFG+CGIPE +I AL  K V  +T VSNN GV+D 
Sbjct: 32  RNGKIYESAIDAVADVQDGAQILFGGFGICGIPEKMINALKQKGVKNITGVSNNGGVDDT 91

Query: 442 GLGILLKSKQIKRMISSYVGENGNL 516
           GLG+L+K KQ+ ++I SYVGEN  L
Sbjct: 92  GLGVLIKQKQVSKVIGSYVGENTEL 116



 Score = 79.8 bits (188), Expect = 4e-15
 Identities = 33/41 (80%), Positives = 40/41 (97%)
 Frame = +2

Query: 563 GTLAERIRAGGAGIPAFFTPTGFGTLIQEGGSPIKYTKEGK 685
           GTLAE+IRAGGAGIPAF+TPTG+ TL+QEGG+PIKY+K+GK
Sbjct: 133 GTLAEKIRAGGAGIPAFYTPTGYATLVQEGGAPIKYSKDGK 173



 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 18/25 (72%), Positives = 23/25 (92%)
 Frame = +3

Query: 687 KSARNFNPAMCRAARVTIAEVEEII 761
           K+ARNFN  MCRAA++T+AEVEEI+
Sbjct: 219 KAARNFNAPMCRAAKITVAEVEEIV 243



 Score = 29.9 bits (64), Expect = 4.1
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +3

Query: 510 EFERQFLSGELEVELTPQ 563
           E  RQ+L GEL VELTPQ
Sbjct: 115 ELVRQYLEGELAVELTPQ 132


>AE014296-398|AAN11508.1|  502|Drosophila melanogaster CG1140-PB,
           isoform B protein.
          Length = 502

 Score =  108 bits (260), Expect = 7e-24
 Identities = 50/85 (58%), Positives = 63/85 (74%)
 Frame = +1

Query: 262 RKSKIYASAQEAVQDVSDGSKLLVGGFGLCGIPENLIKALNIKKVSALTVVSNNAGVEDF 441
           R  KIY SA +AV DV DG+++L GGFG+CGIPE +I AL  K V  +T VSNN GV+D 
Sbjct: 18  RNGKIYESAIDAVADVQDGAQILFGGFGICGIPEKMINALKQKGVKNITGVSNNGGVDDT 77

Query: 442 GLGILLKSKQIKRMISSYVGENGNL 516
           GLG+L+K KQ+ ++I SYVGEN  L
Sbjct: 78  GLGVLIKQKQVSKVIGSYVGENTEL 102



 Score = 79.8 bits (188), Expect = 4e-15
 Identities = 33/41 (80%), Positives = 40/41 (97%)
 Frame = +2

Query: 563 GTLAERIRAGGAGIPAFFTPTGFGTLIQEGGSPIKYTKEGK 685
           GTLAE+IRAGGAGIPAF+TPTG+ TL+QEGG+PIKY+K+GK
Sbjct: 119 GTLAEKIRAGGAGIPAFYTPTGYATLVQEGGAPIKYSKDGK 159



 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 18/25 (72%), Positives = 23/25 (92%)
 Frame = +3

Query: 687 KSARNFNPAMCRAARVTIAEVEEII 761
           K+ARNFN  MCRAA++T+AEVEEI+
Sbjct: 205 KAARNFNAPMCRAAKITVAEVEEIV 229



 Score = 29.9 bits (64), Expect = 4.1
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +3

Query: 510 EFERQFLSGELEVELTPQ 563
           E  RQ+L GEL VELTPQ
Sbjct: 101 ELVRQYLEGELAVELTPQ 118


>BT001845-1|AAN71606.1|  143|Drosophila melanogaster RH54340p
           protein.
          Length = 143

 Score = 73.7 bits (173), Expect = 3e-13
 Identities = 35/59 (59%), Positives = 42/59 (71%)
 Frame = +1

Query: 262 RKSKIYASAQEAVQDVSDGSKLLVGGFGLCGIPENLIKALNIKKVSALTVVSNNAGVED 438
           R  KIY SA +AV DV DG+++L GGFG+CGIPE +I AL  K V  +T VSNN GV D
Sbjct: 32  RNGKIYESAIDAVADVQDGAQILFGGFGICGIPEKMINALKQKGVKNITGVSNNGGVID 90


>BT016021-1|AAV36906.1|  662|Drosophila melanogaster RE15373p
           protein.
          Length = 662

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -1

Query: 687 SFPSLVYLIGDPPS*IKVPNPVGVKKAGIPAPPA--RILSASVPAVSILPLILHLKIVFQ 514
           S P+   ++   P+    P PV ++++ +PAPPA  +I   + P V   P ++  ++ + 
Sbjct: 568 SLPAPAPVVISAPAPAPAPAPVQLQQSFVPAPPAPIQIQQPAQPIVQYSPPVVQQQVTYT 627

Query: 513 IP 508
            P
Sbjct: 628 QP 629


>AE014298-2002|AAN09579.1|  662|Drosophila melanogaster CG11584-PB
           protein.
          Length = 662

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -1

Query: 687 SFPSLVYLIGDPPS*IKVPNPVGVKKAGIPAPPA--RILSASVPAVSILPLILHLKIVFQ 514
           S P+   ++   P+    P PV ++++ +PAPPA  +I   + P V   P ++  ++ + 
Sbjct: 568 SLPAPAPVVISAPAPAPAPAPVQLQQSFVPAPPAPIQIQQPAQPIVQYSPPVVQQQVTYT 627

Query: 513 IP 508
            P
Sbjct: 628 QP 629


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,732,968
Number of Sequences: 53049
Number of extensions: 704534
Number of successful extensions: 2068
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2068
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3602427675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)