Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20808
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48178-4|CAA88202.1|  521|Caenorhabditis elegans Hypothetical pr...   119   3e-27
AF106581-7|ABC48241.1|  362|Caenorhabditis elegans Nuclear hormo...    36   0.043
Z81492-3|CAB04030.1|  382|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear recep...    30   1.6  
Z83125-5|CAB05622.2|  362|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z99281-19|CAD56260.1|  317|Caenorhabditis elegans Hypothetical p...    29   4.9  
U88176-3|AAB42284.1|  210|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AC087081-17|AAG37969.1|  235|Caenorhabditis elegans Hypothetical...    29   4.9  
U53141-8|AAA96110.3|  572|Caenorhabditis elegans Prion-like-(q/n...    28   8.6  
AF083226-1|AAD03684.1|  560|Caenorhabditis elegans nuclear recep...    28   8.6  
AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen prot...    28   8.6  
AF036702-12|AAP31437.1|  559|Caenorhabditis elegans Nuclear horm...    28   8.6  
AF036702-11|AAP31436.1|  560|Caenorhabditis elegans Nuclear horm...    28   8.6  

>Z48178-4|CAA88202.1|  521|Caenorhabditis elegans Hypothetical
           protein C05C10.3 protein.
          Length = 521

 Score =  119 bits (286), Expect = 3e-27
 Identities = 54/82 (65%), Positives = 71/82 (86%)
 Frame = +1

Query: 265 KSKIYASAQEAVQDVSDGSKLLVGGFGLCGIPENLIKALNIKKVSALTVVSNNAGVEDFG 444
           K+K++ SA+EAV+D+ D +KLLVGGFGLCGIPENLI+A+       LT VSNNAGV+++G
Sbjct: 36  KAKVFNSAEEAVKDIPDNAKLLVGGFGLCGIPENLIQAITKTGQKGLTCVSNNAGVDNWG 95

Query: 445 LGILLKSKQIKRMISSYVGENG 510
           LG+LL+++QIK+MISSYVGENG
Sbjct: 96  LGLLLQTRQIKKMISSYVGENG 117



 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 33/45 (73%), Positives = 39/45 (86%)
 Frame = +2

Query: 563 GTLAERIRAGGAGIPAFFTPTGFGTLIQEGGSPIKYTKEGKEKCQ 697
           GTLAERIRA GAG+PAF+TPTG+GT IQEGG+PIKY+K  K K +
Sbjct: 136 GTLAERIRAAGAGVPAFYTPTGYGTQIQEGGAPIKYSKTEKGKIE 180



 Score = 35.9 bits (79), Expect = 0.032
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +3

Query: 684 RKSARNFNPAMCRAARVTIAEVEEII 761
           R +A NFN  MC+A++ TI EVEEI+
Sbjct: 223 RHAAGNFNNPMCKASKCTIVEVEEIV 248



 Score = 33.9 bits (74), Expect = 0.13
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +3

Query: 510 EFERQFLSGELEVELTPQ 563
           EF RQ+LSGELE+E TPQ
Sbjct: 118 EFARQYLSGELELEFTPQ 135


>AF106581-7|ABC48241.1|  362|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 135 protein.
          Length = 362

 Score = 35.5 bits (78), Expect = 0.043
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 178 KKTIRCQLFKACEFHWKDKKLCDLCQIIR 264
           K  I+C+  K+C  H+KD K+C  C++ R
Sbjct: 40  KSAIKCRKDKSCRIHYKDPKICRFCRMER 68


>Z81492-3|CAB04030.1|  382|Caenorhabditis elegans Hypothetical
           protein E03H4.6 protein.
          Length = 382

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = -3

Query: 631 KSSRCKKGRNTCTSCTYSFCQCTCGVNSTSNSPLKNCLSNSHFLQHMRRSS 479
           K ++CK  R  C +C + +C    G+        KN  +   ++ + R+ S
Sbjct: 104 KKNQCKGKRKNCRACRFDYCVKIAGMKRNLVRQRKNSTNTPMYILNRRKDS 154


>Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical
           protein ZK662.3b protein.
          Length = 817

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 154 FIYHDSNYKKTIRCQLFKACEFHWKDKKLCDLCQIIR 264
           F   ++N +K IRC   + CE +   ++ C  C++ +
Sbjct: 123 FFRRNANKEKEIRCPFNEQCEINMVSRRFCQRCRLTK 159


>Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical
           protein ZK662.3a protein.
          Length = 780

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 154 FIYHDSNYKKTIRCQLFKACEFHWKDKKLCDLCQIIR 264
           F   ++N +K IRC   + CE +   ++ C  C++ +
Sbjct: 123 FFRRNANKEKEIRCPFNEQCEINMVSRRFCQRCRLTK 159


>AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 817

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 154 FIYHDSNYKKTIRCQLFKACEFHWKDKKLCDLCQIIR 264
           F   ++N +K IRC   + CE +   ++ C  C++ +
Sbjct: 123 FFRRNANKEKEIRCPFNEQCEINMVSRRFCQRCRLTK 159


>Z83125-5|CAB05622.2|  362|Caenorhabditis elegans Hypothetical
           protein T15D6.6 protein.
          Length = 362

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/51 (21%), Positives = 24/51 (47%)
 Frame = -3

Query: 631 KSSRCKKGRNTCTSCTYSFCQCTCGVNSTSNSPLKNCLSNSHFLQHMRRSS 479
           K+++CK  R  C +C + +C    G+        +N  +   ++ + R+ S
Sbjct: 50  KNNQCKGMRKNCRACRFDYCVKIAGMKRNLVKQRRNSTNTPMYILNRRKDS 100


>Z99281-19|CAD56260.1|  317|Caenorhabditis elegans Hypothetical
           protein Y57G11C.38 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 598 CTSCTYSFCQCTCGVNSTSNSPLKNCLSNSHFLQHMRRS-SFLSV 467
           C+S   S    +C   STS+S    C  NS F   + +S S LSV
Sbjct: 59  CSSTLSSSANISCSAASTSSSIKSTCSCNSDFCNSLAKSKSALSV 103


>U88176-3|AAB42284.1|  210|Caenorhabditis elegans Hypothetical
           protein F18F11.1 protein.
          Length = 210

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 151 TFIYHDSNYKKTIRCQLFK 207
           T++YHDSNY   I+  LFK
Sbjct: 190 TYLYHDSNYWSDIKTFLFK 208


>AC087081-17|AAG37969.1|  235|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.2 protein.
          Length = 235

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 620 PTGFGTLIQEGGSPIKYTKEGKEKCQELQ 706
           P GF +++ E  SPIKYT     K   LQ
Sbjct: 102 PYGFASILSESESPIKYTFPKTTKLTNLQ 130


>U53141-8|AAA96110.3|  572|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 13
           protein.
          Length = 572

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 628 SSRCKKGRNTCTSCTYSFCQCTCGVNS 548
           S +C + +N C S     CQ +CG N+
Sbjct: 394 SQQCIQAQNLCQSACQPSCQSSCGSNT 420


>AF083226-1|AAD03684.1|  560|Caenorhabditis elegans nuclear receptor
           NHR-8 protein.
          Length = 560

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/63 (22%), Positives = 27/63 (42%)
 Frame = +1

Query: 154 FIYHDSNYKKTIRCQLFKACEFHWKDKKLCDLCQIIRKSKIYASAQEAVQDVSDGSKLLV 333
           F   +++  K I+C    +C+     +K C  C+ + K        E + D+   S ++ 
Sbjct: 49  FFRRNASKHKEIKCPFSDSCQITSASRKFCQACR-LNKCFAVGMNSEWLNDLKPKSSIVS 107

Query: 334 GGF 342
           G F
Sbjct: 108 GKF 110


>AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen protein
           70 protein.
          Length = 530

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -1

Query: 693 HFSFPSLVYLIGDPPS*IKVPNPVGVKKAGIPAPPARILSASVPAVSILPLILHLKIVF 517
           H ++P +V   G PP+ +  PNP G K A I + P +  S S        +++ L I F
Sbjct: 474 HPAYP-IVPTRGYPPTTVTPPNPYGPKDAYITSDP-KPNSGSTLVAPFFAVVMALAICF 530


>AF036702-12|AAP31437.1|  559|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 8, isoform b protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/63 (22%), Positives = 27/63 (42%)
 Frame = +1

Query: 154 FIYHDSNYKKTIRCQLFKACEFHWKDKKLCDLCQIIRKSKIYASAQEAVQDVSDGSKLLV 333
           F   +++  K I+C    +C+     +K C  C+ + K        E + D+   S ++ 
Sbjct: 49  FFRRNASKHKEIKCPFSDSCQITSASRKFCQACR-LNKCFAVGMNSEWLNDLKPKSSIVS 107

Query: 334 GGF 342
           G F
Sbjct: 108 GKF 110


>AF036702-11|AAP31436.1|  560|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 8, isoform a protein.
          Length = 560

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/63 (22%), Positives = 27/63 (42%)
 Frame = +1

Query: 154 FIYHDSNYKKTIRCQLFKACEFHWKDKKLCDLCQIIRKSKIYASAQEAVQDVSDGSKLLV 333
           F   +++  K I+C    +C+     +K C  C+ + K        E + D+   S ++ 
Sbjct: 49  FFRRNASKHKEIKCPFSDSCQITSASRKFCQACR-LNKCFAVGMNSEWLNDLKPKSSIVS 107

Query: 334 GGF 342
           G F
Sbjct: 108 GKF 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,200,408
Number of Sequences: 27780
Number of extensions: 373320
Number of successful extensions: 1267
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)