Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20808
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   5.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   5.5  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   7.3  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   7.3  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 596 AGIPAFFTPTGFGTLIQEGG 655
           AGIP FF     G ++  GG
Sbjct: 30  AGIPMFFMELALGQMLTVGG 49


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = +3

Query: 330 SWWFWT 347
           +WWFWT
Sbjct: 28  AWWFWT 33


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 761 NNFLHFCYSYTSSPAHSWIE 702
           +NF H   SY   P H ++E
Sbjct: 365 HNFGHVAISYIHDPDHRYLE 384


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 603 IPAPPARILSASVPAVSILPLILH 532
           +PA P R+L  +VPA  ++ +  H
Sbjct: 13  LPAGPPRLLGWNVPAEELIHIPEH 36


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 604 NTCTSCTYSFCQCTCGVN 551
           NT T  T +FC   CG N
Sbjct: 35  NTMTHTTNAFCLPFCGPN 52


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 604 NTCTSCTYSFCQCTCGVN 551
           NT T  T +FC   CG N
Sbjct: 34  NTMTHTTNAFCLPFCGPN 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,194
Number of Sequences: 438
Number of extensions: 4415
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)