Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20808
         (777 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26250.1 68418.m03131 sugar transporter, putative similar to ...    28   6.0  
At1g26780.1 68414.m03260 myb family transcription factor (MYB117...    28   6.0  
At1g06230.2 68414.m00659 DNA-binding bromodomain-containing prot...    28   6.0  
At1g06230.1 68414.m00658 DNA-binding bromodomain-containing prot...    28   6.0  
At3g05960.1 68416.m00680 sugar transporter, putative similar to ...    28   7.9  
At2g40370.1 68415.m04978 laccase, putative / diphenol oxidase, p...    28   7.9  
At2g04750.1 68415.m00485 fimbrin-like protein, putative similar ...    28   7.9  

>At5g26250.1 68418.m03131 sugar transporter, putative similar to
           hexose transporter [Lycopersicon esculentum] GI:5734440,
           sugar carrier protein {Ricinus communis} SP|Q41144,
           monosaccharide transporter [Nicotiana tabacum] GI:19885;
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 507

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 578 RIRAGGAGIPAFFTPTGFGTLIQEGGSPIK--YTKEGKEKCQELQ 706
           RI  GGAGIPA     G   + +   S I+   TKEGKE  ++++
Sbjct: 199 RIALGGAGIPALILLFGSLLICETPTSLIERNKTKEGKETLKKIR 243


>At1g26780.1 68414.m03260 myb family transcription factor (MYB117)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 280

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -3

Query: 544 SNSPLKNCLSNSHFLQ-HMRRSSFLSV--YF*EEYPSQNLQH 428
           SN+PLK  L+N+H    +    SF+S   YF + +P  NL H
Sbjct: 213 SNNPLKPHLTNNHHPNPNPNYHSFISTNHYFAQPFPEFNLTH 254


>At1g06230.2 68414.m00659 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 766

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +1

Query: 307 VSDGSKLLVGGFGLCGIPENLIKALNIKKVSALTVVSNNAGVED 438
           +++G   ++ GF   G+P  +I+A       +++V+ N  GV +
Sbjct: 322 INNGGGRILSGFASAGLPREVIRAPRPVNQLSISVLENTQGVNE 365


>At1g06230.1 68414.m00658 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 766

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +1

Query: 307 VSDGSKLLVGGFGLCGIPENLIKALNIKKVSALTVVSNNAGVED 438
           +++G   ++ GF   G+P  +I+A       +++V+ N  GV +
Sbjct: 322 INNGGGRILSGFASAGLPREVIRAPRPVNQLSISVLENTQGVNE 365


>At3g05960.1 68416.m00680 sugar transporter, putative similar to
           hexose transporter GI:5734440 GB:CAB52689 [Lycopersicon
           esculentum], Sugar carrier protein C [Ricinus communis]
           SP|Q41144, monosaccharide transporter [Nicotiana
           tabacum] GI:19885; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 507

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 578 RIRAGGAGIPAFFTPTGFGTLIQEGGSPIKYTK--EGKEKCQELQ 706
           RI  GGAGIPA     G   +I+   S I+  K  EGKE  ++++
Sbjct: 198 RIALGGAGIPAVILLFGSLLIIETPTSLIERNKNEEGKEALRKIR 242


>At2g40370.1 68415.m04978 laccase, putative / diphenol oxidase,
           putative similar to laccase [Populus balsamifera subsp.
           trichocarpa][GI:3805960]
          Length = 580

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -2

Query: 446 KPKSSTPALLDTTVRADTFFILRALIRFSGIPQSPKPPTNNFEPSD 309
           KP  + P LL     A+   +LR  IR  G P +    T N +P D
Sbjct: 157 KPHRNVPLLLGEWWDANPVDVLRESIRTGGAPNNSDAYTINGQPGD 202


>At2g04750.1 68415.m00485 fimbrin-like protein, putative similar to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893; contains Pfam profile PF00307: Calponin
           homology (CH) domain
          Length = 652

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +1

Query: 223 WKDKKLCDLCQIIRKSKIYASAQEAVQDVSDGSKLLVGGFGLCGIPENLIKALNIKKVSA 402
           W+  +   LC    K+          QD+++G+  LV G     I   L+  LN+KK   
Sbjct: 185 WERTENLSLCLNSAKAIGCTVVNIGTQDIAEGTPHLVLGLIFQIIKIQLLADLNLKKTPQ 244

Query: 403 LT-VVSNNAGVEDFGLGILLKSKQIKRM 483
           L  +V  N  VE+  +G+  +   +K M
Sbjct: 245 LVELVEENQDVEEL-MGLAPEKLLLKWM 271


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,916,521
Number of Sequences: 28952
Number of extensions: 334220
Number of successful extensions: 969
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)