Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20806
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 28 1.4
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 28 1.4
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 27 2.5
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch... 27 3.3
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 26 5.7
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 26 5.7
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 25 7.5
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos... 25 7.5
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 25 9.9
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces... 25 9.9
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 25 9.9
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 400 ITTCHIICSFIKKDTQGGYLEQGHKYTALKLQKHASSTYVRDGIGMFR 543
+ CH +K T LE+G+ LK+ S+++R G+ MFR
Sbjct: 1964 VEACHAKTLEQQKKTGRIELERGYATIPLKIDVPFHSSFLRGGVRMFR 2011
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +1
Query: 232 SEISLCQLIYKIIFNGMTVLFKLECPNRPFIKSFLGSFKLHHFVNQPSSGAKSDNSITTC 411
S +S+ + ++ F G ++ F E P+I S L +F L + +PSSGA S I C
Sbjct: 70 SMMSVAIVAFQWFFWGYSLTFSHE--GGPYIGS-LANFGLRQTLGRPSSGASSVPDILFC 126
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 27.1 bits (57), Expect = 2.5
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -3
Query: 497 FCSFNAVYLWPC 462
F SF A+YLWPC
Sbjct: 35 FISFLAIYLWPC 46
>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 376
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 461 SKYPPCVSFLINEHIIWHVVIELSLLAPEL 372
SKY P FL+ HI+W +L L P L
Sbjct: 119 SKYNPSRQFLLRVHIMWTTGGDLPLSNPVL 148
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.8 bits (54), Expect = 5.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 571 HFNRVVQLYYGTYLFHHVHMY*M 503
HF R +Y TY+FH++ + M
Sbjct: 643 HFYRSTMFFYMTYVFHYLPFFIM 665
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 25.8 bits (54), Expect = 5.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -3
Query: 479 VYLWPCSKYPPCVSFLINEH 420
+++W S+ PP F IN+H
Sbjct: 163 IFVWDVSRKPPLQLFTINQH 182
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/39 (30%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Frame = -2
Query: 627 YLVRYSIF-LLFKIKNLVLFILTESSNSITEHTYSITYI 514
+L R+S F ++F+I +++FI++ +++S +E + +YI
Sbjct: 194 FLARFSSFNVVFQICTILIFIISLAASSTSETRNTGSYI 232
>SPCC737.04 |||S. pombe specific UPF0300 family protein
6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 160 INVFVTSLSWLHIVFSTISVENLNSE 237
+N+ VTS WL + +S+ENL +
Sbjct: 59 VNINVTSQDWLSKLDRNLSIENLTGK 84
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 185 DKDVTKTLIKVHTNVYVTLQLGHNAQL*TIYEILKLPLYT 66
DKD K L + V + QL H+ + T+Y++ ++P YT
Sbjct: 61 DKDTWKRLQR---EVTILRQL-HHPNIITLYQVFRVPKYT 96
>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 533 VCSVIELDDSVKMNSTKFFILNSR-NILYRTRYT 631
+C+ +D+ K N T + +LN++ N + T YT
Sbjct: 135 ICNFNMANDASKENETPYMVLNNKFNPVLTTEYT 168
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 391 DNSITTCHIICSFIKKDTQGGYL 459
DN+ITT + + I+K+ +G YL
Sbjct: 85 DNNITTGKVYSNVIQKERRGDYL 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,559
Number of Sequences: 5004
Number of extensions: 66482
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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