Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20806
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0438 + 3852221-3853207,3853544-3854757,3855258-3855330,385...    30   1.5  
04_01_0199 - 2377406-2377573,2377649-2377730,2378006-2378274,237...    29   4.5  
02_04_0444 - 22974979-22975251,22975338-22975379,22975471-229754...    28   7.8  

>08_01_0438 +
           3852221-3853207,3853544-3854757,3855258-3855330,
           3856715-3856843,3857060-3857103,3857186-3857265,
           3857342-3857396,3857712-3857919
          Length = 929

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +1

Query: 418 ICSFIKKDTQGGYL---EQGHKYTALKLQKHASSTYVRDGIGMFRNR 549
           +C+F +K+TQ  YL   +     TA  L+K ASS + R     F+++
Sbjct: 506 VCNFYEKETQADYLTTFQMATVRTASPLEKQASSIFTRSIFEKFQDQ 552


>04_01_0199 -
           2377406-2377573,2377649-2377730,2378006-2378274,
           2379648-2379788,2380891-2381076,2381529-2381765,
           2382077-2382292,2382389-2382719,2382842-2382954,
           2383288-2383602,2383713-2383840,2385274-2385547
          Length = 819

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 302 SSLNKTVIPLNIILYISWHRDISEFKFSTEIVENTICSHDKD 177
           +SL K    L +I Y   H   + F    E +EN +C H++D
Sbjct: 455 NSLKKGCDCLGVIKYFDAH--FTNFTGGVETIENAVCLHEED 494


>02_04_0444 -
           22974979-22975251,22975338-22975379,22975471-22975479,
           22975783-22975968,22976063-22976299,22982410-22982625,
           22982729-22983059,22983410-22983522,22984538-22984647,
           22985325-22985439
          Length = 543

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 299 SLNKTVIPLNIILYISWHRDISEFKFSTEIVENTICSHDKD 177
           SL K    L +I Y   H   + F    E +EN +C H++D
Sbjct: 292 SLKKGCDCLGLIKYFDAH--FTNFTGGVETIENVVCFHEED 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,303,002
Number of Sequences: 37544
Number of extensions: 353368
Number of successful extensions: 657
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)