Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20806
         (673 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    28   0.23 
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    23   6.6  
AY645022-1|AAT92558.1|  165|Anopheles gambiae hairy protein.           23   8.8  

>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 28.3 bits (60), Expect = 0.23
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
 Frame = -2

Query: 204 EHDMQP--RQRCDENIN*STYKC-LC-----YITIRAQCAIVDNIRDP 85
           EH   P  R+R DE  N  TYKC +C     Y   R +C+ ++++ +P
Sbjct: 498 EHPSDPEYRERADECSNAGTYKCGICECDGTYHGQRCECSAMESLLEP 545


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 23.4 bits (48), Expect = 6.6
 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +1

Query: 94  YIVYNCALCPNCNVT*TFVCTLINVFVT-SLSWLHIVFSTISVENLNSEISLCQLIYKII 270
           ++  +C  C +  +   F+   +  FV  S S+    F+  ++ +  +EISL +L+ + +
Sbjct: 38  FVSPSCLECSSVPLFINFIFMFLLHFVLFSFSFPFFSFAPCTLASA-TEISLPELVTRSL 96

Query: 271 FNGMTVLFKLECPN 312
            N      +L CPN
Sbjct: 97  SNLELPSCRLPCPN 110


>AY645022-1|AAT92558.1|  165|Anopheles gambiae hairy protein.
          Length = 165

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 563 PSRPTLLRNIPIPSRT 516
           PS+P +   +PIPSRT
Sbjct: 27  PSQPPVPMLVPIPSRT 42


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 741,459
Number of Sequences: 2352
Number of extensions: 15913
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 67322955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)