Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20806
(673 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81142-6|CAB03508.1| 344|Caenorhabditis elegans Hypothetical pr... 31 0.75
Z49888-4|CAH60776.1| 742|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z49888-3|CAA90063.2| 759|Caenorhabditis elegans Hypothetical pr... 29 4.0
AC024882-11|AAX22280.1| 333|Caenorhabditis elegans Seven tm rec... 28 5.3
AC024882-10|AAF60929.1| 341|Caenorhabditis elegans Seven tm rec... 28 5.3
AF040643-1|AAB94960.1| 998|Caenorhabditis elegans Hypothetical ... 28 6.9
Z82261-7|CAH60757.2| 300|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z75526-2|CAA99768.2| 341|Caenorhabditis elegans Hypothetical pr... 27 9.2
U13019-12|AAC24448.1| 316|Caenorhabditis elegans Serpentine rec... 27 9.2
>Z81142-6|CAB03508.1| 344|Caenorhabditis elegans Hypothetical
protein ZK1037.9 protein.
Length = 344
Score = 31.1 bits (67), Expect = 0.75
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = -2
Query: 594 KIKNLVLFILTESSNSITEHTYSITYICTRCVFL*L*RCILMALFQISTL 445
K +NL +L E +NS++ T ++TYI FL C+L+ LF + L
Sbjct: 12 KTRNLTEPVLCEIANSLSTVTKALTYITPHISFL----CVLINLFHFTIL 57
>Z49888-4|CAH60776.1| 742|Caenorhabditis elegans Hypothetical
protein F47A4.3b protein.
Length = 742
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +1
Query: 397 SITTCHIICSFIKKDTQGGYLEQGHKYTALKLQKHASSTYVRD 525
SI TC+ + F++ D++GG+ E + T++ + A++ +D
Sbjct: 116 SIITCYPVLKFLEIDSRGGHFEPAEE-TSINVPAIAAAVVTKD 157
>Z49888-3|CAA90063.2| 759|Caenorhabditis elegans Hypothetical
protein F47A4.3a protein.
Length = 759
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +1
Query: 397 SITTCHIICSFIKKDTQGGYLEQGHKYTALKLQKHASSTYVRD 525
SI TC+ + F++ D++GG+ E + T++ + A++ +D
Sbjct: 133 SIITCYPVLKFLEIDSRGGHFEPAEE-TSINVPAIAAAVVTKD 174
>AC024882-11|AAX22280.1| 333|Caenorhabditis elegans Seven tm
receptor protein 169,isoform b protein.
Length = 333
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/68 (22%), Positives = 29/68 (42%)
Frame = -2
Query: 639 RYAVYLVRYSIFLLFKIKNLVLFILTESSNSITEHTYSITYICTRCVFL*L*RCILMALF 460
++ + LV + + ++F L+ ILT S + + Y + Y C + + I+
Sbjct: 7 KFTIQLVSFIVSIIFNF-TLIYLILTRSPKKMGTYKYLLIYFCCFSILYSILDIIVEPFI 65
Query: 459 QISTLCVF 436
Q C F
Sbjct: 66 QSHGSCFF 73
>AC024882-10|AAF60929.1| 341|Caenorhabditis elegans Seven tm
receptor protein 169,isoform a protein.
Length = 341
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/68 (22%), Positives = 29/68 (42%)
Frame = -2
Query: 639 RYAVYLVRYSIFLLFKIKNLVLFILTESSNSITEHTYSITYICTRCVFL*L*RCILMALF 460
++ + LV + + ++F L+ ILT S + + Y + Y C + + I+
Sbjct: 7 KFTIQLVSFIVSIIFNF-TLIYLILTRSPKKMGTYKYLLIYFCCFSILYSILDIIVEPFI 65
Query: 459 QISTLCVF 436
Q C F
Sbjct: 66 QSHGSCFF 73
>AF040643-1|AAB94960.1| 998|Caenorhabditis elegans Hypothetical
protein F14D2.6 protein.
Length = 998
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +1
Query: 205 STISVENLNSEISLCQLIYKIIFNGMTVLFKLECPNRPF---IKSFLGSFKLHHFVNQPS 375
S + + N++ SL L NGM +++ + PN F +KS LG+ +L Q +
Sbjct: 667 SGLKITNVSDFTSLKPLSQLKTLNGMLEIYETDLPNISFLGNLKSLLGTPRLEFSYTQFN 726
Query: 376 SGAKSDN 396
+ + DN
Sbjct: 727 TTSIHDN 733
>Z82261-7|CAH60757.2| 300|Caenorhabditis elegans Hypothetical
protein C35D6.10 protein.
Length = 300
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/35 (28%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = -2
Query: 666 LLEKSKFF-FRYAVYLVRYSIFLLFKIKNLVLFIL 565
+L ++FF F+Y + + Y +F++ + N+V+F++
Sbjct: 81 ILTNNRFFIFKYLTFSICYFLFIISQTFNIVVFLV 115
>Z75526-2|CAA99768.2| 341|Caenorhabditis elegans Hypothetical
protein C06H2.2 protein.
Length = 341
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +1
Query: 202 FSTISVENLNSEISLCQL---IYKIIFNGMTVLFKLECP 309
++ + E++ E+S+C L + KI+ G+++ F ++CP
Sbjct: 189 YAVLDSESVQPEVSICNLRKILNKIVKIGVSINFGVKCP 227
>U13019-12|AAC24448.1| 316|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 8 protein.
Length = 316
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -2
Query: 672 NSLLEKSKFFFRYAVYLVRYSIFLLFKIKNLVLFILTESSNSITEHTYSITY 517
N+++ K F + + + Y + + +L LFI+ + IT T SIT+
Sbjct: 164 NTIISKKVLIFYFGGFYINYLKIIPWASMSLFLFIIRSAVVMITVVTTSITF 215
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,236,546
Number of Sequences: 27780
Number of extensions: 368475
Number of successful extensions: 985
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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