Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20806
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04370.1 68416.m00462 hypothetical protein contains Pfam prof...    31   0.70 
At1g26730.1 68414.m03255 EXS family protein / ERD1/XPR1/SYG1 fam...    29   2.8  
At3g28840.1 68416.m03598 expressed protein                             29   3.7  
At5g18990.1 68418.m02256 pectinesterase family protein contains ...    28   6.5  
At5g07400.1 68418.m00847 forkhead-associated domain-containing p...    28   6.5  
At3g59250.1 68416.m06605 F-box family protein contains F-box dom...    28   6.5  
At2g15370.1 68415.m01758 xyloglucan fucosyltransferase, putative...    28   6.5  
At5g20680.1 68418.m02456 expressed protein predicted proteins, A...    27   8.6  
At3g57750.1 68416.m06433 protein kinase, putative similar to wal...    27   8.6  

>At3g04370.1 68416.m00462 hypothetical protein contains Pfam profile
           PF01657: Domain of unknown function
          Length = 332

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 409 CHIICSFIKKDTQGGYLEQGHKYTALKLQKHASSTYVRDG 528
           CH+I  F + DT G  +   HKY   +  +H     + DG
Sbjct: 140 CHLIYKFERIDTPGAQVNNHHKYKLFETPEHGLIHKICDG 179


>At1g26730.1 68414.m03255 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 750

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -3

Query: 356 WCNLNDPKKLLI--KGLFGHSSLNKTVIPLNIILYISWHRDISEFKFS 219
           W  L+ P K L+  K L  H ++    I LNI+L ++W + + +F  S
Sbjct: 645 WGLLHRPSKHLLREKLLVPHKAVYYVAIVLNIVLRMAWLQTVLDFNLS 692


>At3g28840.1 68416.m03598 expressed protein 
          Length = 391

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/35 (37%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = +1

Query: 289 LFKLECPNRPFIKSFLGSFKLH-HFVNQPSSGAKS 390
           + +L+CP +P  KSF G+ + + +F+N  +SG+K+
Sbjct: 56  VLELKCPLKPQYKSFFGNLRSYMNFINS-ASGSKN 89


>At5g18990.1 68418.m02256 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 330

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 557 DSVKMNSTKFFILNSRNILYRTRYTAYLKK 646
           DSV +N+T +F +N +  LYR + T   KK
Sbjct: 47  DSVPINNTHWFFINVKAGLYREKITIPQKK 76


>At5g07400.1 68418.m00847 forkhead-associated domain-containing
           protein / FHA domain-containing protein 
          Length = 1084

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +2

Query: 62  YQYTKVALGSRILSTIAHCALIVM*HKHLYVL*LMFSSHLCRGCISC--SQRFRLKI 226
           Y    V +  R+ S +++C  I+     L  L L   SH  + C+SC  S+ FR K+
Sbjct: 209 YPPKAVGVVERVNSLVSYCRHILKSDDPLSCLRLSIISHSGKECLSCCTSKMFRSKV 265


>At3g59250.1 68416.m06605 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 425

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = +1

Query: 142 TFVCTLINVFVTSLSWLHIVFSTISVENLNSEISLCQLIYKIIFNGMTVLFKLEC 306
           TF C  I VF   +        ++  E+L + +  C ++  ++F G+  ++ ++C
Sbjct: 274 TFCCESIPVFNNLIQLTIKTNQSVGWESLPALLKNCPILETLVFEGLLHMYTIKC 328


>At2g15370.1 68415.m01758 xyloglucan fucosyltransferase, putative
           (FUT5) identical to SP|Q9SJP4 Probable
           fucosyltransferase 5 (EC 2.4.1.-) (AtFUT5) {Arabidopsis
           thaliana}; similar to xyloglucan fucosyltransferase
           GI:5231145 from [Arabidopsis thaliana]
          Length = 533

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 533 PIPSRTYVLDACFCSFNAVYLWPCSK-YPPCVSFLINEHII 414
           P P  +++L   F   N  Y W  +K YP C   +  +H I
Sbjct: 186 PFPGTSWLLPLDFPMLNYTYAWGYNKEYPRCYGTMSEKHSI 226


>At5g20680.1 68418.m02456 expressed protein predicted proteins,
           Arabidopsis thaliana
          Length = 551

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/75 (24%), Positives = 34/75 (45%)
 Frame = +1

Query: 301 ECPNRPFIKSFLGSFKLHHFVNQPSSGAKSDNSITTCHIICSFIKKDTQGGYLEQGHKYT 480
           + P  P +K+F  S    HFV    +   S N+ T   I    +++++      +  K T
Sbjct: 439 QLPLHPGLKAFYRSLSPRHFVGGEWNTGGSCNNTTPMSIGKEVLQEESSDYSAGRAVKGT 498

Query: 481 ALKLQKHASSTYVRD 525
            +KL    + +++RD
Sbjct: 499 GVKLLDITALSHIRD 513


>At3g57750.1 68416.m06433 protein kinase, putative similar to
           wall-associated kinase 1 [Arabidopsis thaliana]
           gi|3549626|emb|CAA08794; contains protein kinase domain,
           Pfam:PF00069
          Length = 334

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = -3

Query: 311 FGHSSLNKTVIPLNIILYISWHRDISEFKFSTEIVENTICSHDKDVTKTLIKVHTNVYVT 132
           F  + +++ + P NI +  +W   +S+F F   I E  +   D DV   +  V  + Y T
Sbjct: 165 FPETIVHRNINPTNIFIDENWTAKLSDFWFCVAIPEGELYVED-DVKGVIGFVDPDYYWT 223

Query: 131 LQL 123
           +++
Sbjct: 224 MKV 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,641,547
Number of Sequences: 28952
Number of extensions: 312934
Number of successful extensions: 722
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)