Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20805
         (773 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    29   0.041
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    25   0.67 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   1.6  
DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory pro...    23   2.7  
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    23   3.6  
DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    22   4.7  
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    22   4.7  
AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450 ...    22   4.7  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   6.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.3  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 29.1 bits (62), Expect = 0.041
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = +2

Query: 416 PLNPKANREKMTQIMFETFNT-PAMYVAIQAVSRCTRPVVPPVS-CWTPATVSPTPCPST 589
           PL    NR    Q  +      PAM V  +   RC   VVPP   C  P+T+ P P    
Sbjct: 165 PLGKSCNRYWQCQGGYPRLQRCPAMLVFDRRSLRC---VVPPTEDCDVPSTIPPPPPEED 221

Query: 590 KDTHSP 607
            D++ P
Sbjct: 222 DDSNIP 227


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 314 IVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 409
           +VT+W + E+I++     +L V     PV+LT
Sbjct: 158 VVTDWVNFERIYYKLTKKKLSVFFGNKPVILT 189


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 488 YVAIQAVSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 616
           Y     V   T  + P ++CW   +++ +P P  + +  PTPS
Sbjct: 304 YSTWSTVQTPTTVMSPTINCW---SLTSSPPPPYQISAQPTPS 343


>DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory
           protein 14 protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 186 GTRREEHHLLRNRP 145
           G R+  HHL++N+P
Sbjct: 82  GVRKVLHHLIKNKP 95


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +2

Query: 188 LDRGKAPPSGRDGRYGTEGLLCRDEAQSKRGILTLKYPIEHGIVTNWDDMEK 343
           LD+G+  P G+  +      L  D A+    +      + H ++ N  DM K
Sbjct: 46  LDKGRCTPEGKKLKSTIPEALSTDCAKCNEKVKANVRKVLHHLIDNKPDMWK 97


>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
           protein 16 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 186 GTRREEHHLLRNRP 145
           G R+  HHL+ N+P
Sbjct: 82  GVRKVIHHLIENKP 95


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
           protein 9 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 186 GTRREEHHLLRNRP 145
           G R+  HHL+ N+P
Sbjct: 82  GVRKVIHHLIENKP 95


>AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 283 PDPQIPHRTRNRH 321
           PD  +P RT NRH
Sbjct: 110 PDNFLPERTANRH 122


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
 Frame = +3

Query: 480 PPCTSPSKPCLAVRVRSYHRYRAGL-----RRRCLPHRAHLRRIRTPPRHPASGLSRSRP 644
           PP  S ++P L       + Y   L      +    H+A +R +  PP+       RS P
Sbjct: 26  PPSLSDTRPMLPYPQNYINSYLFSLSLAQNNQLFTHHKAPIRPVALPPKREIPSPKRSSP 85


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 352 MPNLLHVIPVSDDSVFD 302
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 352 MPNLLHVIPVSDDSVFD 302
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 352 MPNLLHVIPVSDDSVFD 302
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 352 MPNLLHVIPVSDDSVFD 302
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,139
Number of Sequences: 336
Number of extensions: 4730
Number of successful extensions: 19
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)