BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20805 (773 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 174 1e-44 SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 111 1e-25 SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 110 2e-25 SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 95 1e-20 SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 63 4e-11 SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 59 8e-10 SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 57 2e-09 SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 1e-07 SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 38 0.002 SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.10 SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 31 0.24 SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 29 0.56 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.0 SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.0 SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 3.9 SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.2 SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 26 5.2 SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 26 5.2 SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 5.2 SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 6.9 SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 25 9.1 SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.1 SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 9.1 >SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2|||Manual Length = 375 Score = 174 bits (423), Expect = 1e-44 Identities = 78/84 (92%), Positives = 80/84 (95%) Frame = +2 Query: 257 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 436 DEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+N Sbjct: 56 DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSN 115 Query: 437 REKMTQIMFETFNTPAMYVAIQAV 508 REKMTQI+FETFN PA YVAIQAV Sbjct: 116 REKMTQIIFETFNAPAFYVAIQAV 139 Score = 172 bits (418), Expect = 5e-44 Identities = 80/88 (90%), Positives = 87/88 (98%) Frame = +1 Query: 508 VSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS 687 +SLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+ Sbjct: 140 LSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYT 199 Query: 688 FTTTAEREIVRDIKEKLCYVALDFERKL 771 F+TTAEREIVRDIKEKLCYVALDFE++L Sbjct: 200 FSTTAEREIVRDIKEKLCYVALDFEQEL 227 Score = 110 bits (265), Expect = 2e-25 Identities = 48/53 (90%), Positives = 52/53 (98%) Frame = +3 Query: 96 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV 254 +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYV Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYV 54 >SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 111 bits (267), Expect = 1e-25 Identities = 48/88 (54%), Positives = 70/88 (79%) Frame = +1 Query: 508 VSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS 687 ++LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+ Sbjct: 145 LALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHE 204 Query: 688 FTTTAEREIVRDIKEKLCYVALDFERKL 771 ++AE+EIVR+IKEK CYVA DF ++ Sbjct: 205 LVSSAEKEIVREIKEKCCYVASDFRSEI 232 Score = 91.1 bits (216), Expect = 2e-19 Identities = 40/84 (47%), Positives = 58/84 (69%), Gaps = 1/84 (1%) Frame = +2 Query: 260 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKAN 436 EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N Sbjct: 61 EAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRN 120 Query: 437 REKMTQIMFETFNTPAMYVAIQAV 508 +EK+ + +ET N PA+ ++Q V Sbjct: 121 KEKIAEYFYETLNVPALSFSLQPV 144 Score = 61.3 bits (142), Expect = 1e-10 Identities = 26/47 (55%), Positives = 34/47 (72%) Frame = +3 Query: 114 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV 254 + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +V Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFV 58 >SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 390 Score = 110 bits (264), Expect = 2e-25 Identities = 48/85 (56%), Positives = 65/85 (76%) Frame = +1 Query: 508 VSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS 687 +SLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+ Sbjct: 140 LSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYA 199 Query: 688 FTTTAEREIVRDIKEKLCYVALDFE 762 F TA+ E VR++KEKLCYV+ D E Sbjct: 200 FNRTADFETVREMKEKLCYVSYDLE 224 Score = 99.5 bits (237), Expect = 5e-22 Identities = 41/97 (42%), Positives = 68/97 (70%) Frame = +2 Query: 218 RDGRYGTEGLLCRDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 397 + G + ++ DEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102 Query: 398 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAV 508 +LLTE P+NP ANREKM + MFE + +YVAIQAV Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAV 139 Score = 48.0 bits (109), Expect = 1e-06 Identities = 21/35 (60%), Positives = 26/35 (74%) Frame = +3 Query: 102 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 206 E A +V+DNG+G K G+A D+ PR FPSIVGRP Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36 >SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 427 Score = 95.1 bits (226), Expect = 1e-20 Identities = 39/74 (52%), Positives = 50/74 (67%) Frame = +2 Query: 287 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 466 +L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148 Query: 467 TFNTPAMYVAIQAV 508 +FN +Y+A+QAV Sbjct: 149 SFNCAGLYIAVQAV 162 Score = 65.7 bits (153), Expect = 7e-12 Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 2/80 (2%) Frame = +1 Query: 535 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAER 708 TG V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R S TAER Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER 239 Query: 709 EIVRDIKEKLCYVALDFERK 768 IKE+ CYV D ++ Sbjct: 240 -----IKEECCYVCPDIVKE 254 Score = 42.3 bits (95), Expect = 7e-05 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%) Frame = +3 Query: 114 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYV 254 +++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYM 55 >SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces pombe|chr 2|||Manual Length = 433 Score = 63.3 bits (147), Expect = 4e-11 Identities = 29/73 (39%), Positives = 41/73 (56%) Frame = +2 Query: 284 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 463 + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122 Query: 464 ETFNTPAMYVAIQ 502 E+ PA Y+A Q Sbjct: 123 ESLRCPATYLAKQ 135 Score = 40.3 bits (90), Expect = 3e-04 Identities = 16/34 (47%), Positives = 24/34 (70%) Frame = +3 Query: 99 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 200 +EV+A+V+D GS + GF+G+D P+ V PS G Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42 Score = 30.7 bits (66), Expect = 0.24 Identities = 15/56 (26%), Positives = 27/56 (48%) Frame = +1 Query: 517 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY 684 +ASG+ T ++D G S IY+G+ L +G + D L + L ++ + Sbjct: 141 FASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQTLRDKNF 196 >SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 721 Score = 58.8 bits (136), Expect = 8e-10 Identities = 25/70 (35%), Positives = 42/70 (60%) Frame = +2 Query: 299 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 478 P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144 Query: 479 PAMYVAIQAV 508 P++ I + Sbjct: 145 PSVAYGIDGL 154 Score = 37.1 bits (82), Expect = 0.003 Identities = 19/76 (25%), Positives = 35/76 (46%) Frame = +1 Query: 532 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAERE 711 ++GIVL+ G+ SH +P+ G + R+ G + YL+K+ + SF Sbjct: 165 SSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPS 224 Query: 712 IVRDIKEKLCYVALDF 759 + C+V+ D+ Sbjct: 225 QAELLMHDHCHVSSDY 240 Score = 35.9 bits (79), Expect = 0.006 Identities = 15/32 (46%), Positives = 22/32 (68%) Frame = +3 Query: 114 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 209 LV+DNGS +AG+ G+ P+ VF ++V R R Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58 >SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces pombe|chr 3|||Manual Length = 401 Score = 57.2 bits (132), Expect = 2e-09 Identities = 26/77 (33%), Positives = 48/77 (62%) Frame = +1 Query: 541 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 720 +V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216 Query: 721 DIKEKLCYVALDFERKL 771 +IKE +CYV+ +F+ + Sbjct: 217 EIKESVCYVSQNFKEDM 233 >SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 430 Score = 51.6 bits (118), Expect = 1e-07 Identities = 21/67 (31%), Positives = 39/67 (58%) Frame = +2 Query: 308 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 487 +GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133 Query: 488 YVAIQAV 508 Y+ QAV Sbjct: 134 YLTKQAV 140 Score = 36.7 bits (81), Expect = 0.004 Identities = 14/34 (41%), Positives = 23/34 (67%) Frame = +3 Query: 99 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 200 EE+ +LV+D GS + G+AG+++P + PS G Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41 >SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosaccharomyces pombe|chr 1|||Manual Length = 523 Score = 37.9 bits (84), Expect = 0.002 Identities = 23/75 (30%), Positives = 37/75 (49%) Frame = +1 Query: 508 VSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS 687 + LYA G G+V+D G + PI +G + A +L L GR +T +L +L E + Sbjct: 186 MGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHLQNLLRESLPT 245 Query: 688 FTTTAEREIVRDIKE 732 ++ + DI E Sbjct: 246 LKSSGQYVSKEDITE 260 Score = 34.7 bits (76), Expect = 0.015 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%) Frame = +2 Query: 299 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 466 PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171 Query: 467 TFNTPAMYVAIQ 502 P +A + Sbjct: 172 ECQVPGFTIAYE 183 >SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1666 Score = 31.9 bits (69), Expect = 0.10 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Frame = +2 Query: 359 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 502 +Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451 >SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pombe|chr 1|||Manual Length = 620 Score = 30.7 bits (66), Expect = 0.24 Identities = 13/58 (22%), Positives = 30/58 (51%) Frame = +1 Query: 517 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 690 + +G + V+D G + + EG +P++ ++++ G D+T MK+L + + Sbjct: 286 FGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343 >SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 277 Score = 29.5 bits (63), Expect = 0.56 Identities = 19/66 (28%), Positives = 29/66 (43%) Frame = -2 Query: 331 IPVSDDSVFDGVFEGQDTSFALCLIST*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 152 +P + +V +TSFAL S S PT + P +E + +S+PA Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122 Query: 151 PALHIP 134 P L+ P Sbjct: 123 PQLNSP 128 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 27.1 bits (57), Expect = 3.0 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%) Frame = -2 Query: 253 T*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 95 T S P+ PT+ P P N S P PL+TTN TS+S Sbjct: 402 TGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455 >SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 1611 Score = 27.1 bits (57), Expect = 3.0 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = +2 Query: 524 PVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 616 P VP S P+ P P PS++ P PS Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080 >SPCC18.03 |||shuttle craft like transcriptional regulator|Schizosaccharomyces pombe|chr 3|||Manual Length = 1077 Score = 26.6 bits (56), Expect = 3.9 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = +2 Query: 533 PPVSCWTPATVSPTPCPSTKDTHSP 607 PPV+C TP P C K H P Sbjct: 631 PPVACGTPIPDCPYLCVLPKSCHHP 655 >SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces pombe|chr 2|||Manual Length = 226 Score = 26.2 bits (55), Expect = 5.2 Identities = 10/25 (40%), Positives = 18/25 (72%) Frame = +2 Query: 401 LLTEAPLNPKANREKMTQIMFETFN 475 +L APL+ + +KM +++FET+N Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205 >SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual Length = 398 Score = 26.2 bits (55), Expect = 5.2 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +2 Query: 506 VSRCTRPVVPPVSCWTPATVSPTPCPST 589 VSR T+P+ S +P VSP PST Sbjct: 263 VSRLTQPLPSLASTASPQQVSPPAAPST 290 >SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 194 Score = 26.2 bits (55), Expect = 5.2 Identities = 18/51 (35%), Positives = 21/51 (41%) Frame = +3 Query: 519 RVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRPHRLPHEDPH 671 R RS HR+ G RR P+R HL R RH + R R H Sbjct: 142 RTRSNHRH--GSHRRHEPYRTHLSRHH---RHSTTNYHSKRDDRYERRREH 187 >SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual Length = 309 Score = 26.2 bits (55), Expect = 5.2 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -2 Query: 235 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 143 P+PT P LPT NT + P+ PAL Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101 >SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizosaccharomyces pombe|chr 1|||Manual Length = 927 Score = 25.8 bits (54), Expect = 6.9 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -3 Query: 255 LHKSPSVPYRPSRPDGGAFPRSRGTR 178 + K+PS PY SRP A S TR Sbjct: 310 ISKAPSYPYSSSRPSASASLASSPTR 335 >SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizosaccharomyces pombe|chr 1|||Manual Length = 457 Score = 25.4 bits (53), Expect = 9.1 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = -3 Query: 567 DTVAGVQHDTGGTTGRVQRDTAWMATYMAGV 475 D G+ D G TG + DT+WM + ++ V Sbjct: 58 DIELGMPLDLAGITGFFEGDTSWMHSDLSSV 88 >SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1224 Score = 25.4 bits (53), Expect = 9.1 Identities = 14/45 (31%), Positives = 19/45 (42%) Frame = +2 Query: 464 ETFNTPAMYVAIQAVSRCTRPVVPPVSCWTPATVSPTPCPSTKDT 598 +T ++ + + T P S TPA V P P PST T Sbjct: 815 KTSQASSILPTVPRTTSYTSPYATTSSHITPADVHPLPPPSTSTT 859 >SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces pombe|chr 1|||Manual Length = 721 Score = 25.4 bits (53), Expect = 9.1 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Frame = +1 Query: 454 DH-VRNIQHARHVRRHPSRVSLYASGRTTGIVLDSGDGVSHTVPIYEGYALP 606 DH V+N A ++R++ + + +A G+ +G G+ H + + +GYA+P Sbjct: 126 DHDVQNKSEA-NLRKYKN-IESFAKGQGIDFY-PAGRGIGHQIMVEQGYAMP 174 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,336,777 Number of Sequences: 5004 Number of extensions: 75085 Number of successful extensions: 277 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 229 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 270 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 373338084 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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