Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20803
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    31   0.15 
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    27   1.4  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    26   3.3  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   4.4  
SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit L13...    26   4.4  
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    25   7.6  

>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
 Frame = +2

Query: 296  PILDMSENGQCQQLQEWEATRLQPSLSAALGK------SPASDVKQVLKSSLEHVNGLLE 457
            P+L M EN     + E   T L  SL   LGK      S   D+ +VL++   H   L E
Sbjct: 965  PLLQMLENNSKSVIGENWTTCLHSSLVDNLGKYRKYDGSKILDILRVLRNKRHHYQDLPE 1024

Query: 458  GHQYVLGD 481
              + VLGD
Sbjct: 1025 SVRRVLGD 1032


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +2

Query: 428 SLEHVNGLLEGHQYVLGDKISAADISIGARYILLLTMMISENS 556
           SL+  N L++   Y++GD+ + AD+  G+   +    +I E +
Sbjct: 141 SLKIPNELVKDRTYLVGDRFTLADLFFGSLLRIFFNSIIDEKT 183


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +2

Query: 269 SNAAVQYLFPILDMSENGQCQQLQEWEATRLQPSLSAALGKSPASDVKQVLKSS 430
           S  A++ L P+L  S +G    + EW A  +    +  LG +P +    +L S+
Sbjct: 306 SRQALKNLSPMLHFSFHGMLMIVTEWAAYEMTSLGAGYLGTAPLASQSILLTST 359


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 487 DFVPENVLVAFQQSVNVF 434
           DF+P+N+ + FQ   N+F
Sbjct: 99  DFIPKNIFLQFQNVANLF 116


>SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit
           L13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 235 SSRSIQNKVLFQQCGGPVSVPDPGHVREWTMPAASRMGGY 354
           S R ++N   +   G       PGH++EWTM   +   G+
Sbjct: 66  SGRKLENHKYYSHSG------QPGHLKEWTMEEMAAKRGH 99


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -2

Query: 336 SCWHCPFSDMSR 301
           +CW+ PFSD+S+
Sbjct: 71  NCWNVPFSDLSK 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,156,362
Number of Sequences: 5004
Number of extensions: 41171
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)