Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20803
         (562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0748 - 35971065-35971268,35972022-35972597                       29   2.5  
09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821     29   3.4  
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744...    29   3.4  
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540     29   3.4  
08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201     29   3.4  
03_02_0784 - 11154395-11154888,11155284-11155360,11155447-111554...    28   5.9  
03_02_0444 - 8543426-8543635,8543945-8544151,8544293-8544400,854...    28   5.9  
07_03_0959 - 22885750-22886001,22886073-22886195,22886343-228864...    27   7.7  

>03_06_0748 - 35971065-35971268,35972022-35972597
          Length = 259

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 483 LSPRTYWWPSNNPLTCSSDDFKTCFTSEAGDFPSAALRDG 364
           LSP+  W  ++ PL    D  +TC       F +A LR G
Sbjct: 64  LSPQLRWEEAHEPLHNGIDSNRTCGVGPGMSFANALLRSG 103


>09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821
          Length = 576

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +2

Query: 332 QLQEWEATRLQPSLSAALGKSPASDVKQVLKSSLEHVNGLLEGHQYVLGDKISAADIS 505
           QL+E+E  +L  +    L    + D K+  +   E   GL +  + VLGDK+    +S
Sbjct: 251 QLKEFEGKKLVSATKEGLKLDESEDEKKRQEELKEKFEGLCKVIKEVLGDKVEKVVVS 308


>09_04_0548 -
           18469636-18470037,18471164-18472705,18474052-18474474,
           18474874-18474999
          Length = 830

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +2

Query: 332 QLQEWEATRLQPSLSAALGKSPASDVKQVLKSSLEHVNGLLEGHQYVLGDKISAADIS 505
           QL+E+E  +L  +    L    + D K+  +   E   GL +  + VLGDK+    +S
Sbjct: 505 QLKEFEGKKLVSATKEGLKLDESEDEKKRQEELKEKFEGLCKVIKEVLGDKVEKVVVS 562


>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
          Length = 699

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +2

Query: 332 QLQEWEATRLQPSLSAALGKSPASDVKQVLKSSLEHVNGLLEGHQYVLGDKISAADIS 505
           QL+E+E  +L  +    L    + D K+  +   E   GL +  + VLGDK+    +S
Sbjct: 505 QLKEFEGKKLVSATKEGLKLDESEDEKKRQEELKEKFEGLCKVIKEVLGDKVEKVVVS 562


>08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201
          Length = 699

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +2

Query: 332 QLQEWEATRLQPSLSAALGKSPASDVKQVLKSSLEHVNGLLEGHQYVLGDKISAADIS 505
           QL+E+E  +L  +    L    + D K+  +   E   GL +  + VLGDK+    +S
Sbjct: 505 QLKEFEGKKLVSATKEGLKLDESEDEKKRKEELKEKFEGLCKVIKEVLGDKVEKVVVS 562


>03_02_0784 -
           11154395-11154888,11155284-11155360,11155447-11155497,
           11155599-11155672,11156127-11156215,11156533-11156618,
           11157570-11157669,11158540-11158622,11158776-11159194
          Length = 490

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = +1

Query: 202 TMYSQGPVSCRSSRS----IQNKVLFQQCGGPVSVPDP 303
           T+ S  P+S +SS +    I N + FQ CG P + P P
Sbjct: 394 TLMSSPPISQQSSSAPPYLIHNLLQFQPCGPPYAPPPP 431


>03_02_0444 -
           8543426-8543635,8543945-8544151,8544293-8544400,
           8544744-8544803,8544914-8544989,8545190-8545347,
           8545479-8545541,8545653-8545737,8546423-8547438
          Length = 660

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 292 VPDPGHVREWTMPAASRMGGYSPSAVPKCRAREIPSF 402
           +P PG   EWT  A  R+G   P A+P C +R+   F
Sbjct: 515 LPYPG--LEWTQ-ALYRIGKGEPPAIPNCLSRDARDF 548


>07_03_0959 -
           22885750-22886001,22886073-22886195,22886343-22886429,
           22886504-22886555,22886701-22886825,22887002-22887213,
           22887317-22887518,22887928-22888032,22889643-22889704,
           22889998-22890187,22890260-22890355,22890442-22890544,
           22891448-22891551,22893284-22893370,22894033-22894118,
           22894397-22894489,22895615-22895777,22895899-22896011,
           22896113-22896235,22897393-22897444,22897843-22897886,
           22897975-22898048,22898133-22898224,22899374-22899441,
           22900817-22900892,22900952-22901215
          Length = 1015

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 219 PRQLPLLEVDPE*GSFPAMRRSSICSRSWTCP 314
           P  L L  V+ E GSFP M R ++ SR W  P
Sbjct: 535 PSDLSLKNVE-EKGSFPCMLRKTMFSRVWYKP 565


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,251,317
Number of Sequences: 37544
Number of extensions: 295363
Number of successful extensions: 802
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)