Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20803
         (562 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26100| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.85 
SB_44160| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.85 
SB_25546| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_50881| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_17660| Best HMM Match : Meleagrin (HMM E-Value=5.9)                 29   3.4  
SB_54755| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  

>SB_26100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -3

Query: 332 AGIVHSRTCPGSGTDTGPPHCWKRTLFWIDLEERQLTGPCEYIVF---KLGFHNFYFLCC 162
           AG +H +  PG  +  G        + W+ +  RQ T P E I+F   ++ F +F +L C
Sbjct: 7   AGPIHQQPLPGPASTPGRASASPGRVHWLQVSARQ-TQPLEPILFPKLRIYFADFPYLHC 65

Query: 161 *ISR 150
            I++
Sbjct: 66  SINQ 69


>SB_44160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -3

Query: 332 AGIVHSRTCPGSGTDTGPPHCWKRTLFWIDLEERQLTGPCEYIVF---KLGFHNFYFLCC 162
           AG +H +  PG  +  G        + W+ +  RQ T P E I+F   ++ F +F +L C
Sbjct: 21  AGPIHQQPLPGPASTPGRASASPGRVHWLQVSARQ-TQPLEPILFPKLRIYFADFPYLHC 79

Query: 161 *ISR 150
            I++
Sbjct: 80  SINQ 83


>SB_25546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -3

Query: 329 GIVHSRTCPGSGTDTGPPHCWKRTLFWIDLEERQLTGPCEYIVF---KLGFHNFYFLCC* 159
           G +H +  PGS  D          + W+ +  RQ T P E I+F   ++ F +F +L C 
Sbjct: 2   GPIHQQPLPGSSFDPDGRSASPGRVHWLQVSARQ-TQPLEPILFPKLRIYFADFPYLHCS 60

Query: 158 ISR 150
           I++
Sbjct: 61  INQ 63


>SB_50881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -3

Query: 329 GIVHSRTCPGSGTDTGPPHCWKRTLFWIDLEERQLTGPCEYIVF---KLGFHNFYFLCC* 159
           G +H +  PG  +  G        + W+ +  RQ T P E I+F   ++ F +F +L C 
Sbjct: 2   GPIHQQPLPGPASTPGRASASPGRVHWLQVSARQ-TQPLEPILFPKLRIYFADFPYLHCS 60

Query: 158 ISR 150
           I++
Sbjct: 61  INQ 63


>SB_17660| Best HMM Match : Meleagrin (HMM E-Value=5.9)
          Length = 310

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 184 WKPSLKTMYSQGPVSCRSSRSIQNKVLFQQCGGPVSVPDPGHVR 315
           W    KT  S  P++CR S   QN+         V + D   +R
Sbjct: 234 WSKLAKTRASDSPIACRDSSPFQNETHSPSSSDSVDIIDSEQLR 277


>SB_54755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 4/34 (11%)
 Frame = +2

Query: 413 QVLKSSLEHVNGLLE----GHQYVLGDKISAADI 502
           ++L   +E++N LL+    G  Y++GDKI+ ADI
Sbjct: 180 EILPVQMENINKLLQENNGGKGYLVGDKITYADI 213


>SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 2   WNVVTYANYLI*GLCTIIAKFKKIGFCVRNN 94
           W V+T+  Y+I  +CTI+  + KI   +R +
Sbjct: 188 WYVLTWYVYIIVAMCTIVTSYYKIFRTIRRH 218


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,199,322
Number of Sequences: 59808
Number of extensions: 312085
Number of successful extensions: 714
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)