Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20801
         (747 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6ED71 Cluster: Fatty acid hydroxylase; n=1; Pedobacter...    36   1.4  
UniRef50_Q2SSX3 Cluster: Membrane protein, putative; n=2; Mycopl...    33   5.6  
UniRef50_Q55G26 Cluster: Putative uncharacterized protein; n=1; ...    33   5.6  
UniRef50_Q03DB5 Cluster: Predicted membrane protein; n=2; Lactob...    33   7.5  
UniRef50_A3I5Q5 Cluster: Putative uncharacterized protein; n=1; ...    33   7.5  
UniRef50_A2FXT0 Cluster: Putative uncharacterized protein; n=1; ...    33   9.9  

>UniRef50_A6ED71 Cluster: Fatty acid hydroxylase; n=1; Pedobacter
           sp. BAL39|Rep: Fatty acid hydroxylase - Pedobacter sp.
           BAL39
          Length = 222

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +2

Query: 227 ALTLIYLFYYLFKKVLPYH---KHFTLKITNYLIYGLMH 334
           ++ L   FY+LFK +LP H     FT  I  YL+Y +MH
Sbjct: 132 SIPLALAFYFLFKAILPVHLLDGFFTGFIIGYLVYDMMH 170


>UniRef50_Q2SSX3 Cluster: Membrane protein, putative; n=2;
           Mycoplasma|Rep: Membrane protein, putative - Mycoplasma
           capricolum subsp. capricolum (strain California kid /
           ATCC27343 / NCTC 10154)
          Length = 235

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 19/57 (33%), Positives = 33/57 (57%)
 Frame = +1

Query: 238 YLFILLFI*KSTAISQTFYIENNKLFNLWSDACDNNGVHNIRNLSARRWNTIIIKKN 408
           +L + ++I K  ++   +    N LFNL    C+++ + NIRNL+   +N +IIK N
Sbjct: 168 WLILFVYIKKYLSLELDYKYSYN-LFNL-EMICNDHYIKNIRNLTLNYFNLLIIKNN 222


>UniRef50_Q55G26 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 830

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +1

Query: 265 KSTAISQTFYI-ENNKLFNLWSDACDNNGVHNIRNLSARRWNTIIIKKNLMK--TYFEIH 435
           KS  +   F+I +NNK   +  D    N  +N  NL  + W  III+  ++K    F+IH
Sbjct: 137 KSNILDSCFHIIDNNKNLLIKKDTLLKNNNNNSGNLFLKIWRNIIIRNEILKYMKLFKIH 196


>UniRef50_Q03DB5 Cluster: Predicted membrane protein; n=2;
           Lactobacillaceae|Rep: Predicted membrane protein -
           Pediococcus pentosaceus (strain ATCC 25745 / 183-1w)
          Length = 206

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
 Frame = +2

Query: 227 ALTLIYL---FYYLFKKVLPYHKHFTLKITNYLIYGLMHVTIMAYIT---FAIYRLEDGI 388
           ++T +Y+    +Y+   +  Y+   TLK+ NY++   + VT+M Y T   FA + +  G+
Sbjct: 125 SITCLYVGIALFYIGIVIASYYNKTTLKLENYVVVAFIVVTLMGYFTSMCFATFSIIAGV 184


>UniRef50_A3I5Q5 Cluster: Putative uncharacterized protein; n=1;
           Bacillus sp. B14905|Rep: Putative uncharacterized
           protein - Bacillus sp. B14905
          Length = 160

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 195 RIIQRTFVPGTHSHLFIYFIIYLKKYCHITNIL 293
           R I RT++P  HS   +  + +LKK  HIT +L
Sbjct: 38  RFIMRTYIPNKHSRNEVLMMTWLKKNTHITILL 70


>UniRef50_A2FXT0 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 572

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
 Frame = -1

Query: 666 IHTDNIHITLEDYRSKNIYIIVFT---LSNYTIYR 571
           +H+D I++TL++ + KNI  +VFT   L   T+YR
Sbjct: 161 VHSDKIYLTLQNDKGKNIEAVVFTDKELKPNTLYR 195


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 706,065,857
Number of Sequences: 1657284
Number of extensions: 14204899
Number of successful extensions: 32258
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32241
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61323318355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)