Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20801
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    29   0.70 
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    28   1.6  
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    26   5.0  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   6.6  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    25   8.7  

>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 698 TRKRLDLNLYTYIQTISTSHWK-IIDRKIYI*LFSPSLITQSIVIRDKILGFYLN 537
           TR+R +         +  +HW+  I RK Y+ L   +++ QSIV ++     Y+N
Sbjct: 791 TRQRFEREKIERAAILIQAHWRSYIQRKRYLSLIKCAIVIQSIVRKNIAYSRYIN 845


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 167 ILFTEEYHEKGRSKWRRVIRNNLLLRGG 84
           I+ T+E  E G ++  RV+RNNL +R G
Sbjct: 90  IVLTDEEMEDGVARINRVVRNNLRVRLG 117


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 733 RTGLMEIKLKTQLENGSILTCIHTYRQY 650
           R   +E +LK     G +LTC++  RQY
Sbjct: 555 RDEAIEARLKFLHSEGDLLTCLNALRQY 582


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 53   FDFLNAESHDHLLATKGYY 109
            FDFLN + +  ++A K YY
Sbjct: 1068 FDFLNTDEYKSVMAIKDYY 1086


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 292 YIENNKLFNLWSDACDNNGVHNIRNLSARRWN 387
           Y++  K  +L +  CD + VH++     +RWN
Sbjct: 23  YVKEEKQIDLGT--CDQDSVHDLWRRFVKRWN 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,807
Number of Sequences: 5004
Number of extensions: 64679
Number of successful extensions: 185
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)