Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20801
         (747 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52650| Best HMM Match : DUF229 (HMM E-Value=0.6)                    29   4.0  
SB_56918| Best HMM Match : zf-CCHC (HMM E-Value=7.4e-07)               28   9.2  
SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32)                 28   9.2  
SB_41052| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)                    28   9.2  
SB_46816| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_24581| Best HMM Match : zf-CCHC (HMM E-Value=6.9e-07)               28   9.2  
SB_19893| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.2e-14)           28   9.2  
SB_8133| Best HMM Match : RVT_1 (HMM E-Value=1.7e-34)                  28   9.2  

>SB_52650| Best HMM Match : DUF229 (HMM E-Value=0.6)
          Length = 558

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 292 YIENNKLFNLWSDACDNNGVHN-IRNLSARRWNTIIIKKN 408
           +I+N K + L +D CD+ GV N  + ++    NT+ +K N
Sbjct: 213 HIDNVKTYTLTNDKCDSCGVKNDDKAVNTLAKNTVFLKDN 252


>SB_56918| Best HMM Match : zf-CCHC (HMM E-Value=7.4e-07)
          Length = 517

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 727 GLMEIKLKTQLENGSILTCIHTYRQYPH 644
           GLM+ K K  L+  ++  C++T R+ PH
Sbjct: 312 GLMKDKYKIPLKPDAVSVCLYTPRRVPH 339


>SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32)
          Length = 991

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 727 GLMEIKLKTQLENGSILTCIHTYRQYPH 644
           GLM+ K K  L+  ++  C++T R+ PH
Sbjct: 292 GLMKDKYKIPLKPDAVSVCLYTPRRVPH 319


>SB_41052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 727 GLMEIKLKTQLENGSILTCIHTYRQYPH 644
           GLM+ K K  L+  ++  C++T R+ PH
Sbjct: 431 GLMKDKYKIPLKPDAVSVCLYTPRRLPH 458


>SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)
          Length = 505

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 295 IENNKLFNLWSDACDNNGVHNIRNLSARRWNTII 396
           IEN+ L NLW D     G  ++ ++  ++++ II
Sbjct: 170 IENDSLMNLWKDEALKRGFLSLMSVPIKKFDKII 203


>SB_46816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1165

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 727 GLMEIKLKTQLENGSILTCIHTYRQYPH 644
           GLM+ K K  L+  ++  C++T R+ PH
Sbjct: 448 GLMKDKYKIPLKPDAVSVCLYTPRRVPH 475


>SB_24581| Best HMM Match : zf-CCHC (HMM E-Value=6.9e-07)
          Length = 469

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 727 GLMEIKLKTQLENGSILTCIHTYRQYPH 644
           GLM+ K K  L+  ++  C++T R+ PH
Sbjct: 437 GLMKDKYKIPLKPDAVSVCLYTPRRVPH 464


>SB_19893| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.2e-14)
          Length = 443

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 562 SRITIDCVIREGENNYIYIFRSIIFQCDVDIVCM 663
           SR  I CV++     Y+ +F + I +C   IVC+
Sbjct: 300 SRNVISCVVQIVRRRYVIVFAAQIVRCRNVIVCV 333


>SB_8133| Best HMM Match : RVT_1 (HMM E-Value=1.7e-34)
          Length = 387

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 727 GLMEIKLKTQLENGSILTCIHTYRQYPH 644
           GLM+ K K  L+  ++  C++T R+ PH
Sbjct: 136 GLMKDKYKIPLKPDAVSVCLYTPRRVPH 163


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,779,150
Number of Sequences: 59808
Number of extensions: 441652
Number of successful extensions: 2578
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2577
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)