Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20801
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19157-3|CAA79566.3|  395|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z49911-6|CAA90132.1|  831|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF038618-10|AAB92065.2|  474|Caenorhabditis elegans P38 map kina...    28   8.1  

>Z19157-3|CAA79566.3|  395|Caenorhabditis elegans Hypothetical
           protein ZC84.4 protein.
          Length = 395

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 212 LCTGNALTLIYLFYYLFKKVLPYHKHFTLKITNYLIYGLMHVTIMAYITFAIYR 373
           LC G+ +T+I +   + + V    +  ++  T+YLI+  M+  +   I F I R
Sbjct: 73  LCVGDLMTMIAMLLLVIELVFGTWQFSSMVCTSYLIFDSMNKFMAPMIVFLISR 126


>Z49911-6|CAA90132.1|  831|Caenorhabditis elegans Hypothetical
           protein M28.8 protein.
          Length = 831

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 325 SDACDNNGVHNIRNLSARRWNTIIIKKNLMKTYF 426
           SDA  N  + N++ L+A   NT  I KN    YF
Sbjct: 585 SDALSNQFITNLQTLAANAPNTTSIAKNQNNNYF 618


>AF038618-10|AAB92065.2|  474|Caenorhabditis elegans P38 map kinase
           family protein 3 protein.
          Length = 474

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 186 KSRRIIQRTFVPGTHSHLFIYFIIYLKKYCHITNILH 296
           K +R   R  +   H    IY II   KY H  NI+H
Sbjct: 214 KQQRDYGRRVLTDEHIKFIIYQIIRALKYIHSANIIH 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,765,538
Number of Sequences: 27780
Number of extensions: 357971
Number of successful extensions: 984
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)